BAC Information

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BAC

Clone NameMSMg01-316N02
Chromosome7 (Build37)
Map Location 128,825,149 - 128,825,830
singlet/doubletsinglet
Overlap geneUsp31
Upstream geneBC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2
Downstream geneScnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316N02.T7 (MSMg01no316_n02.b1)MSMg01-316N02.TJ (MSMg01no316_n02.g1)
ACCAG437065AG437066
length732840
length of high quality
(start - end)
687 (46 - 732)157 (75 - 231)
definitionCHROMAT_FILE: MSMg01no316_n02.b1 PHD_FILE: MSMg01no316_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:40 2005CHROMAT_FILE: MSMg01no316_n02.g1 PHD_FILE: MSMg01no316_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCCTCTACTTTTTCGATATCCCCTCTTTGAGCTGAAGAATGATCTT
CAGATCTCTCTTTTCCATTAGCTGCCTCTCTCCAGGTAGTCACAGATGGC
CTTGCTTGCACAACTCAGCTTCTGGGATATGGAGAGTAGTCAGTAGAAGC
TGTTCTGCTTCCTTACTTGTCTTCTGCTTTACTCCTTTGTGATAGATATT
TGCTTCACTGAGATCAAATGGGCAATTGAGCCCAGAGGATGACCACCCTG
GTGCTTGTGTTACTTGGCATTTCTCTGGTATTTTGCATTGTTGCTTTCAT
CTCCTCGAGGTTCAGTTTGTGTGAACTTCCTTGACCAGTCTCATTTCTTT
TTGTTAGACTCATGTTGTCAAGATCCTGGCCTGGTGTCTGCTCTTCTCAC
TAGATACTGCTTGAGCAGTTCTCTTTGCTCATTTGATACCCATATGCCTT
TCTGATTTGAATCCCTCCTCTAGATCTTTTTCCTGAGCCATGGGCAGCTG
TATTTGGGGTGATATATAGATGCCTCAAATTCAGCTTGTTCAGAACTCTT
TGGTTTCTTATTTTTAGGTTTATTCATGATCATTACCCAAGTCAGAAATA
AAAAACCTTAATGACATTCCTGGTATTCTCTTTAGCTTCATCTCCAGCTA
CCTAGTCATCTCCATTCTTCTATGGCACATAC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCTCAAAATGTAGGCTTTTGACTTT
TCTTTAAAAAAAGAAGGAAGGAGCCCAAGGAAGGAAAGGAAGGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAAAGGA
GAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGACGCCAGGTTCGACTTACC
TCCTCACCTTTGTGCCTCGTTTCGCCTTGGCCTTGTGCCCTGTGACTCTC
GTTCTCTGCGCCCTCTCTCCCCTTTTTTTTTTTTTTCCTTGTCGGTCTGC
TCCTCCCCGTCAGTTTTTTTTTTTTGCCTCCCCCCCCCTCTCTCACATGT
CTTTGTGTCCTGTTTCTAACGTTGCTCCCCCCCTTTTCTTTTCTGTCTTT
TATTTTCTCCGGTCCTCTCTTTCCCTCTTACTCTGTGATTGTTTTCCCCT
CCTCTTCGTTCTCCCTCATTTTTTCTCTCCCCCTCTCCCTCCCCTTTTTT
CTCCTTTCCTCTGCTTTTCTCGTGTCTCTCCTCCTCTGTTCCCTTTCGTC
CGCCTCCCCCCCTTCTTTTTCCCCTCCCCCCCGCCCTGTTTCTTTATTAT
CCTTACTTCTTCCTCTCTCCTTTTTCCCTTCCCTTTTCCCTCCTCCTCCT
CTTTCTCTTCTCTTCTCTTTTCGCACCCCCCCTTGTCTCTCTCCGCCCTC
CTGTCTTTGTTCACACGTACTGGGTCTCTCCTCTTTTTCTCCCATCTTTT
CTCCTTCTGGCTTTTTGTCCCCGTCACCCACTCTCCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_n02.b1 MSMg01no316_n02.b1 CHROMAT_FILE:
MSMg01no316_n02.b1 PHD_FILE: MSMg01no316_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:40 2005
         (687 letters)



>mm_chr7_128824944_128826030
          Length = 1087

 Score = 1243 bits (643), Expect = 0.0
 Identities = 673/683 (98%), Gaps = 2/683 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcctctactttttcg-atatcccctctttgagctgaagaatgatcttcagatctct 64
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 gaattcctctacttttt-gaatatcccctctttgagctgaagaatgatcttcagatctct 829

                                                                       
Query: 65  cttttccattagctgcctctctccaggtagtcacagatggccttgcttgcacaactcagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 828 cttttccattagctgcctctctccaggtagtcacagatggccttgcttgcacagctcagc 769

                                                                       
Query: 125 ttctgggatatggagagtagtcagtagaagctgttctgcttccttacttgtcttctgctt 184
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 768 ttctgggatatggagagtagtcagtagaagctgttccgtttccttacttgtcttctgctt 709

                                                                       
Query: 185 tactcctttgtgatagatatttgcttcactgagatcaaatgggcaattgagcccagagga 244
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 708 tactcctttgtgatagatatttgcttcactgagatcaaatgggcaagcgagcccagagga 649

                                                                       
Query: 245 tgaccaccctggtgcttgtgttacttggcatttctctggtattttgcattgttgctttca 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tgaccaccccggtgcttgtgttacttggcatttctctggtattttgcattgttgctttca 589

                                                                       
Query: 305 tctcctcgaggttcagtttgtgtgaacttccttgaccagtctcatttctttttgttagac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tctcctcgaggttcagtttgtgtgaacttccttgaccagtctcatttctttttgttagac 529

                                                                       
Query: 365 tcatgttgtcaagatcctggcctggtgtctgctcttctcactagatactgcttgagcagt 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tcatgctgtcaagatcctggcctggtgtctgctcttctcactagatactgcttgagcagt 469

                                                                       
Query: 425 tctctttgctcatttgatacccatatgcctttctgatttgaatccctcctctagatcttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tctctttgctcatttgatacccatatgcctttctgatttgaatccctcctctagatcttt 409

                                                                       
Query: 485 ttcctgagccatgggcagctgtatttggggtgatatatagatgcctcaaattcagcttgt 544
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 408 ttcctgagccatgggcagctgtatttggggtgatacatagatgcctcaaattcagcttgt 349

                                                                       
Query: 545 tcagaactctttggtttcttatttttaggtttattcatgatcattacccaagtcagaaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcagaactctttggtttcttatttttaggtttattcatgatcattacccaagtcagaaat 289

                                                                       
Query: 605 aaaaaaccttaatgacattcctggtattctctttagcttcatctccagctacctagtcat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aaaaaaccttaatgacattcctggtattctctttagcttcatctccagctacctagtcat 229

                                  
Query: 665 ctccattcttctatggcacatac 687
           |||||||||||||||||||||||
Sbjct: 228 ctccattcttctatggcacatac 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)