Query= MSMg01no317_d08.b1 MSMg01no317_d08.b1 CHROMAT_FILE:
MSMg01no317_d08.b1 PHD_FILE: MSMg01no317_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:11 2005
(289 letters)
>mm_chr7_117581175_117581864
Length = 690
Score = 522 bits (270), Expect = e-153
Identities = 285/290 (98%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 1 caaccacaaatgtagaacttgagcataactgagtggaatacggggaacaccttggaagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaccacaaatgtagaacttgagcataactgagtggaatacggggaacaccttggaagta 260
Query: 61 tagtggatacagagcatgcacaaggctctgggttcagtcctcaacacatgcacacatgca 120
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 261 tagtggatacagagcatgcacaaggctctgggtttagtcctcaacacatgcacaaatgca 320
Query: 121 tttacatacaagcaaagaaaataattcagtaatatgtaataaggtatttagtatttctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttacatacaagcaaagaaaataattcagtaatatgtaataaggtatttagtatttctgc 380
Query: 181 ttttaacttactgg-cctcagatttcaaatgaatgtgacaaagcagtgattaatgtctca 239
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 ttttaacttactggtcctcagatttcaaatgaatgtgacaaagcagtgactaatgtctca 440
Query: 240 ctgttagttcattggccttgtcaaagagctagattaaacaatacccattg 289
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgttaggtcattggccttgtcaaagagctagattaaacaatacccattg 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space: 190680
Effective search space used: 190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no317_d08.g1 MSMg01no317_d08.g1 CHROMAT_FILE:
MSMg01no317_d08.g1 PHD_FILE: MSMg01no317_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:11 2005
(285 letters)
>mm_chr7_117745042_117745726
Length = 685
Score = 460 bits (238), Expect = e-134
Identities = 274/290 (94%), Gaps = 7/290 (2%)
Strand = Plus / Minus
Query: 3 tctgtgtagctatggggtaagacttttggcattgttggctgctttggggtcacccatgct 62
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 675 tctgtgtagctatggggtaagacttttggcattgttggctgctttagggtcacccatgct 616
Query: 63 ttctgtaagtcagcacaataaacccacgtgttcttcaagttggactttggtggagtaata 122
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 615 ttctgtaagtcagctcaataaacccaagtgttcttcaagttggactttggtggagtaata 556
Query: 123 cttcggtttgtcattggtgctctataatgggagg-------ttgacatctctttgcctcc 175
||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct: 555 cttcggtttgtcattggtgctctataacgggggggggggggttgacatctctttgcctcc 496
Query: 176 ccagagaaagaattcttgcaacaaatgctaaggatggttattcccattcttaggtttctt 235
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 495 ccagagaaagaattcttgcaacaaatgctaaggatggttatttccatccttaggtttctt 436
Query: 236 cttttggaacaagcaaagactctttctttgtactggcatgacaataatac 285
|||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 435 cttttggaacaagcaaagactctttctttgtactggcatggcagtaatac 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
