BAC Information

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BAC

Clone NameMSMg01-317H23
Chromosome7 (Build37)
Map Location 111,155,500 - 111,315,513
singlet/doubletdoublet
Overlap geneOlfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik
Upstream geneOlfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638
Downstream geneOlfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317H23.T7 (MSMg01no317_h23.b1)MSMg01-317H23.TJ (MSMg01no317_h23.g1)
ACCAG437546AG437547
length744752
length of high quality
(start - end)		319 (426 - 744)234 (127 - 360)
definitionCHROMAT_FILE: MSMg01no317_h23.b1 PHD_FILE: MSMg01no317_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:31 2005CHROMAT_FILE: MSMg01no317_h23.g1 PHD_FILE: MSMg01no317_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:31 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(111,155,500 - 111,155,680)(111,315,283 - 111,315,513)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGA
ATTCACTTCGTTGACCAAAAAGGCCTTGAACTCAAAAATCCACCTGCCTC
TGCCTCCTGAGTGTGTTGATCCAAGGCATGTGCCACCATGCCTGGCTTCA
AAATTCTTAAAAGATATGAACATGCTCTCTGAAGTTATAGGCTCTACATG
TCTCTTTCAGTACTAAATGCTATAATTTAATTAAATGCAACATTTTACGT
AATTTTGACCTATTGGAATAGAAAAATTTCTTGAACTAGAAGACCGATTA
AAGAAAGAACTAACCTAAATATTGATCCTACATGAAAAGTCAAATGAACA
CTACATATCATGAGCTAAAGTGGAATAAGTTTGAGAATCTGGGAGTTTTG
GAAAATAGACATGTGACACACACCTCAGCTAATTCCATACTGATTTCATG
TAAACTGTGTGATTTCTTTCCAGAAGAATCCAGTCAGCAATGCTCTGGGC
ACAGAAGGACACTGATGTCATTTTATTGTTTCTGTCATTAAGCTTTCTAG
TATTAACATTTACTGGAAAAAGTTAAAGTAAAAGTCAGGCTGACCTAGGT
CTCAGGTACTAACTAAAACTTATCTGGGGTCAAAACCTATTCATCTCATT
TAGAATTCATTACTACCCAGATTTTTAATATAATATATACATTTTCACTG
CTTCTATTGTTTACATAAATTATATACTCAACGTATTTTCCAAN

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGTCTGCTGAAGGGATGAAGACAG
GAGGGGCTAGAGAAACAGTAGCCCATGGATAAAGGGACAGTGCTCTGGAA
ACTGCTTTCTGACTTTGGGCTCCAGAAAGCTGTGGAGGGCACAATACTGG
GGCTGCTTCCCCAGGAAGTTCCCCACTTCTGATCAGATTCGTAGGGAGTT
CCTACTTTTTTTTCACCCTGTGTAATTTGCTAGATACCGGTGCTAAGGTA
CGGGGGACTGGCTACAGCTCATGCTCTCATTCCTGCCCAGGCTACTCTCC
TACTCACCTGGTTCTTTCTTCTGCCCCCCCCCACCGCAAAAGAGATCTAG
TGATACCAACTTAGACCTTGACCCCACACTTTTACATATCATGTGCATGC
TTGGTTTCTCAAGATAACCATAGGTTATCTTCTTAACCTCTGTTTTCTGG
ATGAAAAGGTCAGGATGTGGGACTCAGCGGAGAATGAATGTCTTTTGAGT
AAGGAAGCTAGGGAGTGAGAATCTGTAAATCAAGATAAAATATAACCTCA
AAGATTTCCCAATATTGCAATATAATGTAATTCCCCAGAATTATATGTAA
CTCAGGTCTCAAAGCCTTTCTAGAAAAGAAAACGGAAAACTCATGTATGT
TTTTAAGAGCAGGTGTATAGCGCAGATAGAATCTTGAAGGACGAGTGAGT
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_h23.b1 MSMg01no317_h23.b1 CHROMAT_FILE:
MSMg01no317_h23.b1 PHD_FILE: MSMg01no317_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:31 2005
         (319 letters)



>mm_chr7_111155163_111155881
          Length = 719

 Score =  335 bits (173), Expect = 3e-96
 Identities = 179/181 (98%)
 Strand = Plus / Plus

                                                                       
Query: 138 ctggaaaaagttaaagtaaaagtcaggctgacctaggtctcaggtactaactaaaactta 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctggaaaaagttaaagtaaaagtcaggctgacctaggtctcaggtactaactaaaactta 397

                                                                       
Query: 198 tctggggtcaaaacctattcatctcatttagaattcattactacccagatttttaatata 257
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 398 tctggggtcaaaacctattcatctcatttagaattcattactacccagattttttatata 457

                                                                       
Query: 258 atatatacattttcactgcttctattgtttacataaattatatactcaacgtattttcca 317
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 458 atatatacattttcactgcttctattgtttacataaattatatactcaatgtattttcca 517

            
Query: 318 a 318
           |
Sbjct: 518 a 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no317_h23.g1 MSMg01no317_h23.g1 CHROMAT_FILE:
MSMg01no317_h23.g1 PHD_FILE: MSMg01no317_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:31 2005
         (234 letters)



>mm_chr7_111315083_111315716
          Length = 634

 Score =  400 bits (207), Expect = e-116
 Identities = 225/231 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggataaagggacagtgctctggaaactgctttctgactttgggctccagaaagctgtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 431 ggataaagggacagtgctctggaaactgctttctgactttgggctccagaaaggtgtgga 372

                                                                       
Query: 61  gggcacaatactggggctgcttccccaggaagttccccacttctgatcagattcgtaggg 120
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 371 gggcacaatactggggctgcttccctgggaagttccccacttctgatcagattcgtaggg 312

                                                                       
Query: 121 agttcctacttttttttcaccctgtgtaatttgctagataccggtgctaaggtacggggg 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 311 agttcctacttttttttcaccctgtgtcatttgctagataccggtgctaaggttcggggg 252

                                                              
Query: 181 actggctacagctcatgctctcattcctgcccaggctactctcctactcac 231
           |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 251 actggctacagctcatgctctcattcttgcccaggctactctcctactcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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