BAC Information

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BAC

Clone NameMSMg01-317I19
Chromosome7 (Build37)
Map Location 67,166,452 - 67,167,098
singlet/doubletsinglet
Overlap geneSnrpn
Upstream geneLOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snurf
Downstream geneEG664849, LOC100041201, LOC100041211, LOC664896, LOC100041229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317I19.T7 (MSMg01no317_i19.b1)MSMg01-317I19.TJ (MSMg01no317_i19.g1)
ACCAG437584AG437585
length753720
length of high quality
(start - end)
373 (46 - 418)647 (74 - 720)
definitionCHROMAT_FILE: MSMg01no317_i19.b1 PHD_FILE: MSMg01no317_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:34 2005CHROMAT_FILE: MSMg01no317_i19.g1 PHD_FILE: MSMg01no317_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAGGATCTGTCGTTATTTCTCCCTTTTCATTTCTGATTTTGTT
AATTAGGATGCTGTCCTTGTGCCCTCCAGTGAGTCTGGCTAAGGGTTTAT
CTATCTTGTTGATTTTCTCAAAGAACGAGCTCCTCGTTTGGTTGATTCTG
TGAATAGTTCTTCTTGTTTCCATTTGGTTGATTTCACCCCTGAGTTTGAT
TATTTCTTGCTGTCTACTCCTCTTGGGTGAATTTCCTTCCTTTTGTTTTA
GAGCTTTTAGGTGTGTTGTCAAGCTGTTGGTTTTTGCTCTTTCTAGTTTC
TTTTTGGAGGCACTCATAGCTATGAATTTACCTCTTAGAAATGCTTTCAT
TTTGTCCCATAAGTTTGGCCACGCCGCGGCTTCATTTTCATTAAGCTCTA
AAAAGTCTTTAATTTCTTTCTTTATCCCTTTCTTGACCAAAGTATCATTG
AGAACAGTGTTGTTCAGTTTCCATGTGAATGTTGGCTCTCCATTATTTAT
GTTGTTATTGAAGATCAGCCTTAGTCCATGGTGATCTGACAGGATGAATG
GGACAATTTCAATATTTTTGTATCTGTTGAGGCCTATTTTGTGACCAATT
ATAAGGTCAGTTTTGGAGAAGGTACCATGAGGTGCTGAGAAGAAGGTATA
TCCTTTTGTTTTAGGATAAAATGTTCTGTAGATTATCTGTTAAATCCATT
TGN
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGGTACAGAAGTGGTCTGGCTTGTTG
TTCAATTTAACTCAAACTATGGTCAGCTGTGCAGAAGGAACCTCAATTGA
GAAAATGGCTCATCAAATTGGCAAGTTTGTGGTAGTATTTTCTTGATTAA
TGATTGATGCAGGAGGACTCAGGCCACTGTTTTTGCCATCCCTAGGCATT
TCTACCTGGGTTCTATTAGAAACAGGTTGAGCAGCTAGGATGAGCAAGTC
AATAAGCAGAGTTTCTCTGCACTATGTCCTGCTTTCAAGTTCCTGACTTG
AGTGTCTCAAAGAAAGAGAAAGTACAGACCCAATAAACCCTTTCCTCCCA
AAGTCTTTTATTGTCACCGTTTTATCAAAACAACAGAAAGCTAACTAATA
ATAAGGTATAAATCCTCAGTTGTGGCAAATTCCATGGAGATGGTTTGTGA
TGAGTGACATTATGACTGGTGAGTGTGCTTTCCATATCACAGTCCTGGCT
TACTCCTGGTGTAGGCACAGATGCATGGGGGTCTGGTGCTCACATATCTG
AGTTTTCAGATCTTTGTAGTATGCCTCCCATGTGCTTTTGATTTACCTTG
AGAAATCTGATAGTAGTCATTTTTTGTATATATGAATAAGTTACTTATAT
TTGCCTAGTGGTTCAGGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_i19.g1 MSMg01no317_i19.g1 CHROMAT_FILE:
MSMg01no317_i19.g1 PHD_FILE: MSMg01no317_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:34 2005
         (647 letters)



>mm_chr7_67166252_67167298
          Length = 1047

 Score = 1228 bits (635), Expect = 0.0
 Identities = 644/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtacagaagtggtctggcttgttgttcaatttaactcaaactatggtcagctgtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtacagaagtggtctggcttgttgttcaatttaactcaaactatggtcagctgtgca 260

                                                                       
Query: 61  gaaggaacctcaattgagaaaatggctcatcaaattggcaagtttgtggtagtattttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggaacctcaattgagaaaatggctcatcaaattggcaagtttgtggtagtattttct 320

                                                                       
Query: 121 tgattaatgattgatgcaggaggactcaggccactgtttttgccatccctaggcatttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattaatgattgatgcaggaggactcaggccactgtttttgccatccctaggcatttct 380

                                                                       
Query: 181 acctgggttctattagaaacaggttgagcagctaggatgagcaagtcaataagcagagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctgggttctattagaaacaggttgagcagctaggatgagcaagtcaataagcagagtt 440

                                                                       
Query: 241 tctctgcactatgtcctgctttcaagttcctgacttgagtgtctcaaagaaagagaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctgcactatgtcctgctttcaagttcctgacttgagtgtctcaaagaaagagaaagt 500

                                                                       
Query: 301 acagacccaataaaccctttcctcccaaagtcttttattgtcaccgttttatcaaaacaa 360
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 501 acagacccaataaaccctttcctcccaaagtcttttattgtcagtgttttatcaaaacaa 560

                                                                       
Query: 361 cagaaagctaactaataataaggtataaatcctcagttgtggcaaattccatggagatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagaaagctaactaataataaggtataaatcctcagttgtggcaaattccatggagatgg 620

                                                                       
Query: 421 tttgtgatgagtgacattatgactggtgagtgtgctttccatatcacagtcctggcttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtgatgagtgacattatgactggtgagtgtgctttccatatcacagtcctggcttac 680

                                                                       
Query: 481 tcctggtgtaggcacagatgcatgggggtctggtgctcacatatctgagttttcagatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctggtgtaggcacagatgcatgggggtctggtgctcacatatctgagttttcagatct 740

                                                                       
Query: 541 ttgtagtatgcctcccatgtgcttttgatttaccttgagaaatctgatagtagtcatttt 600
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 ttgtagtatgcctcccatgtgcttttgatttaccttgagaaatctgatggtagtcatttt 800

                                                          
Query: 601 ttgtatatatgaataagttacttatatttgcctagtggttcaggctg 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgtatatatgaataagttacttatatttgcctagtggttcaggctg 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)