BAC Information

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BAC

Clone NameMSMg01-317K17
Chromosome7 (Build37)
Map Location 150,007,634 - 150,168,492
singlet/doubletdoublet
Overlap geneEG624121, Th, Ascl2
Upstream geneMuc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264
Downstream geneTspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317K17.T7 (MSMg01no317_k17.b1)MSMg01-317K17.TJ (MSMg01no317_k17.g1)
ACCAG437674AG437675
length747731
length of high quality
(start - end)
229 (437 - 665)265 (420 - 684)
definitionCHROMAT_FILE: MSMg01no317_k17.b1 PHD_FILE: MSMg01no317_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:42 2005CHROMAT_FILE: MSMg01no317_k17.g1 PHD_FILE: MSMg01no317_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,007,634 - 150,007,862)(150,168,228 - 150,168,492)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAAACCCGCG
GATTCCTCAGGGTCTCTCGAAAACCTAGGGTTTTCCCAGGACTTAAAGCT
TCACAGGATGTCACTGGGGTTTAACCTTGTCCTTATGTTTTCATTTGTTC
GAAGCCTTGAGCATGATCTCACTGGAGCCTAAGGCCTTCCTCGGGTTCTA
ATTGGGACCTAATACCTGCTTCTCCCTGGGGCTTAAGCCCCTTTTTTTTT
TTCAGTTTAGACTGGGCCTAAAGGCCTCCCTCACATTCTTAATGGCTAGA
AAGCCATCTACAAAGTCCCATTGATTTTCAACCCTAGTTCCCACTGTGCC
CTAAAATCTTCTTAATTTTTTGCTCTAAATTCATTCCTCAGAGTCTCAGT
GGAGTCTGAGGCCTTTCCCACGCCCCTACTAAGACTTAAAGTTTCCCCAG
TTTCTGTGGACTACCTAAGACCTTCCTCAGGTTATAACTCAGGTGTGGGT
CTTCCCTCACTTTCTCTTGGACAGAAGGCCTTCCCATATTCTAATTGTAT
AAGACCTTTCCAGAAAGTCACTAGGGTCTATTGCTGTCACTTATGGTCTC
ACTTGGTCATCAAGAATTTTTCAGGTTCTCACTGGATCCTAAAGCATTAT
GCAAGTCTCACTATGCATCAGAAATTTCCCAAGTCCTCATTGGTTCTATA
AGGCCTTCAGTAAGTTTTCACTAGATCTGAAAATCTTCTCCTTGTTT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAAAAATATCCAGTCATAAGCTATCTGCAGCTGGCAAAAAT
CATGGCCCTTCTAGGGTCGAGTATGAGACCAATCATAGTTGTCAGCTGGG
AGCAATCTGAAGGAGTCCCATATCCCACATCTGGGATTAAAAAAACATAT
TCACATACCATAACTGGGGTTTTTAAAAAGAAACCATAATTCTCACTACA
GCATCCTTTTCAAGGTTTTCTGGATGGGTCGGCTTTATTTCTTGCCTTCT
GTTGTTGTGATAATTTTTTTGGCCAAAAGCAACTTGGGAAGGACAGGGTT
TATTTCATTTTACAGTTTACAATCCATCACAGAGAAGACAGGTCGGGACT
CAAGGTAAGAACCCGCAACCAGGAACTGGAGCAGAGGCCATGGAAGAATG
CTGTTTACTGGCTTGCTCCATATGGTTCACTCAAACTGCCTTCTTTTTCT
TTTCTTTTTTAAGTTGGATGGTGGATATATTATTTCATTTTGTGGATACA
TGGGAATTTTCACAATAAAAATTAAAAAAGAAGTGCAGTTCTAGAAGAGC
TTCTTTATGAAAATTACACCTTTGTTTCACTTGCCCTTCAAACTCTTTTC
GTAGTTGATTGTCCCAAGCCAAGGGTTGGGCTTTAAACAATGAAACCATA
TAAGCAAAATCTGAGTGTGAAATGCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_k17.b1 MSMg01no317_k17.b1 CHROMAT_FILE:
MSMg01no317_k17.b1 PHD_FILE: MSMg01no317_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:42 2005
         (229 letters)



>mm_chr7_150007434_150008062
          Length = 629

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagtttccccagtttctgtggactacctaagaccttcctcaggttataactcaggtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagtttccccagtttctgtggactacctaagaccttcctcaggttataactcaggtgt 260

                                                                       
Query: 61  gggtcttccctcactttctcttggacagaaggccttcccatattctaattgtataagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtcttccctcactttctcttggacagaaggccttcccatattctaattgtataagacc 320

                                                                       
Query: 121 tttccagaaagtcactagggtctattgctgtcacttatggtctcacttggtcatcaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccagaaagtcactagggtctattgctgtcacttatggtctcacttggtcatcaagaa 380

                                                            
Query: 181 tttttcaggttctcactggatcctaaagcattatgcaagtctcactatg 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttcaggttctcactggatcctaaagcattatgcaagtctcactatg 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no317_k17.g1 MSMg01no317_k17.g1 CHROMAT_FILE:
MSMg01no317_k17.g1 PHD_FILE: MSMg01no317_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:42 2005
         (265 letters)



>mm_chr7_150167952_150168616
          Length = 665

 Score =  474 bits (245), Expect = e-138
 Identities = 260/265 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaactggagcagaggccatggaagaatgctgtttactggcttgctccatatggttca 60
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 541 caggaactggggcagaggccatggaagaatgctgcttactggcttgctccatatggttca 482

                                                                       
Query: 61  ctcaaactgccttctttttcttttcttttttaagttggatggtggatatattatttcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctcaaactgccttctttttcttttcttttttaagttggatggtggatatattatttcatt 422

                                                                       
Query: 121 ttgtggatacatgggaattttcacaataaaaattaaaaaagaagtgcagttctagaagag 180
           ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 421 ttgtggacacatgggaattttcacaataaaaatttaaaaagaagtgcagttctagaagag 362

                                                                       
Query: 181 cttctttatgaaaattacacctttgtttcacttgcccttcaaactcttttcgtagttgat 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttctttatgaagattacacctttgtttcacttgcccttcaaactcttttcgtagttgat 302

                                    
Query: 241 tgtcccaagccaagggttgggcttt 265
           |||||||||||||||||||||||||
Sbjct: 301 tgtcccaagccaagggttgggcttt 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)