BAC Information

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BAC

Clone NameMSMg01-318L21
Chromosome7 (Build37)
Map Location 20,517,135 - 20,517,400
singlet/doubletsinglet
Overlap genenone
Upstream geneNova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr
Downstream gene2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318L21.T7 (MSMg01no318_l21.b1)MSMg01-318L21.TJ (MSMg01no318_l21.g1)
ACCAG438460AG438461
length759746
length of high quality
(start - end)		304 (436 - 739)293 (78 - 370)
definitionCHROMAT_FILE: MSMg01no318_l21.b1 PHD_FILE: MSMg01no318_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:58 2005CHROMAT_FILE: MSMg01no318_l21.g1 PHD_FILE: MSMg01no318_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGC
GGAATTCTGAGGATTGTGACCTGCCCGGCGTGGGGGCGCTTTGCCTGAGA
ATCGGCAGCAGACATCTTGGTTCCGGCATCCTGCCGAGTGTATCCTGCAC
AGGCAGGTGACCATTTTCCTGGCCAGAGGAAAGGGACCTGCCCGGCTCTG
GAGCACTTTGCCTGAGCACTGGCAGCAGACATCTTAGTGCCGGGACCCTG
CTGAGTGTATCCTGAACAGGCATCTTGGCTTCAGGACCCGGCCAGTGTAT
CCTGCACAGCTCCAGAGAATACCAGAGGGCGAAAAGAAAACATAAGAATC
CTACTAACAGAAATCAAGACCACTCACCATCATCAGAACGCAGCACTCCC
GCGCCACCTAGTCCTGGGCACCACCCCACCCCCAAAAAGCTAGACTCAGA
TTTAAAAGCATATCTCATGTTGATGGTAGAGGACATCAAGAAGAACTTAA
ATAACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGATTTACAAGTC
CTTAAAGAAAAACAGGAAAACACAACCAAACAGTTAGAAGTCCTTATAGA
AAAACAGGAAAACACATCCAAACAGGTGATGGAAATTAACAAGACCATAC
TAGACCTAAAAAGATAAGTAGACACAATAAAGAAAACCCGAAGCAAGGCA
ACGCTGGAGATAGAAAACCGAGGAAAAAAATCTGGAACCATAGACACGAG
AATCAGCAA

NAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCGAAATACAGTGTGGCGGTCCAGCACTTGGG
AAATGGAAGCAGGGGCATTAGGAGTCACCCCCATCCTCTGCCAGGTGTAC
AAGAGAACCAGTTACAAAATAAAACAATGGAAGGCAGGCAGGAAGGAGAT
GGCCATCGCTGCAATGACCTGACTCCAGCTCACTAACTCATATTCTCTAC
CCCAGTCCCTCTCCTTGGCGCCTCTGAGGGCAGGTGGAAAATGGGATGGC
GGAGCCTTTTTCTTCTGTTCTCAACTGTAGGAAAGTGTTAGAATTGAGAC
CCAGCCTTCCTGGCTAGTCCTCTTTAAAGATGCTAGCTCTGACTTCCTCT
GGCCCACATTCCCTTCCAGTGACACCGCTCCCCCACTTTCTTGTTCCTTT
TCTTTTGAAAGCCCAGAGAAGATGAAATATACGAAGAACTACCCCATTGA
TGAATGAATCACCAGGGCAGGTCTCCAGTTCGTTTCCCCCCTAACAGATT
GAGTGAGGCTGGGTGGTAGATATCAGCATTCCTCCCTTCCTGCCTCTGAC
CCTCCCCTCCCTCCTAAAGTCGCGCATGCTCTCCTTTTTCTCGCGCCTGG
GCTCTGTGACTACCGAACAGGAATCTCCCCCTTATGTTCTTGTTTGGNAG
ATGTTGGCTGTTAGTGTTCGATGCTCTTCCTCCTGATAGTTGGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_l21.g1 MSMg01no318_l21.g1 CHROMAT_FILE:
MSMg01no318_l21.g1 PHD_FILE: MSMg01no318_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:58 2005
         (293 letters)



>mm_chr7_20516908_20517600
          Length = 693

 Score =  439 bits (227), Expect = e-128
 Identities = 264/293 (90%), Gaps = 27/293 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtggcggtccagcacttgggaaatggaagcaggggcattaggagtcacccccatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 228 agtgtggcggtccagcacttgggaaatggaagcaggggcattaggagtca---------- 277

                                                                       
Query: 61  ctgccaggtgtacaagagaaccagttacaaaataaaacaatggaaggcaggcaggaagga 120
                |||            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 -----agg------------ccagttacaaaataaaacaatggaaggcaggcaggaagga 320

                                                                       
Query: 121 gatggccatcgctgcaatgacctgactccagctcactaactcatattctctaccccagtc 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatggccatcgctgcaaggacctgactccagctcactaactcatattctctaccccagtc 380

                                                                       
Query: 181 cctctccttggcgcctctgagggcaggtggaaaatgggatggcggagcctttttcttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctccttggcgcctctgagggcaggtggaaaatgggatggcggagcctttttcttctg 440

                                                                
Query: 241 ttctcaactgtaggaaagtgttagaattgagacccagccttcctggctagtcc 293
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ttctcaactgtaggaaagtgttagaattgagacccagccttcccggctagtcc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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