BAC Information

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BAC

Clone NameMSMg01-319G09
Chromosome7 (Build37)
Map Location 79,536,065 - 79,536,226
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665535, Mctp2, LOC100042873
Downstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319G09.T7 (MSMg01no319_g09.b1)MSMg01-319G09.TJ (MSMg01no319_g09.g1)
ACCAG438933AG438934
length747771
length of high quality
(start - end)
143 (121 - 263)167 (125 - 291)
definitionCHROMAT_FILE: MSMg01no319_g09.b1 PHD_FILE: MSMg01no319_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:44 2005CHROMAT_FILE: MSMg01no319_g09.g1 PHD_FILE: MSMg01no319_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTC
ATCATATTACAATCACTGTATGTTTATGTCTACACAGGTATGTAAATATG
TAGTGTGGGGTTCTGCCCATGCTTGTACACATGTGTGTACACACACACAC
ACACACACACACACACACACACTCACTCATTGCTTCAGTTTTTCCCCCTT
AAAATATGAATGTTTGCCCTCTGTTTTGCTTTTTATGGTATTAATTTTTT
TCCAAATCATTTTACTTCAAATGGATGTTTAGATCATTGTACCAGGTATA
AGACAGTGATCGCACTATCCCCATAGAGCTCTTCTTCTTGATTAGTCTCT
ATTTTAATCTAAATGCTGCTAACGAAAGTCTCATGCAATTCCATAGTTAT
TTCCTTAGCACCCCCCCCCTTATTTGATAAGTCAAAAACTATGTTGTTAC
GTGTCGTTGTGAATTTGCACTGTCAACTTGCCTTCCACAATTATATTCTA
TATTTCTCACATTATGCTCCTAATTGTACATCCGTGTCATCCTTGATAAT
TTAAGCTCTTTTTGATTTTCATATTTGGTTACCACTCAAATGACTTGTAT
GCATTATTTTTATAACAATTAAATTTCATCTTCACTGTTCAATAAATACA
ATCTTAATACTTATATAACCTTATACAATATCTTTATCTCCTATCAATCT
CTATTTTTTACTCCTTCCAAATCAATATCTAATTTATTTCATTACTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTACCAACGACGTTCTTTAGAATTGTTAATTTCATGAACTTCAAGA
CACTACTAACTTATTACCCAGAAAATATGAAAAACAAGAGGCAAAAATAT
CAAACAGAAATGACTTGAAGGGAAAATTCATTTAAGATTTGTTAATAAAG
TGTTCACGACATTATTTTTCATGATTACCCCAATTTGCAAATAACCTTTA
TATCTTTGGGGGAGGGGGGAATGGATGCCATTGAGTCACATCTACACATG
GAAGAAAGCCTTTTTATGATTTTCCAGCATACTATTGATACATGTAACCA
CCCGATTGTTTGTTCCCCCCCGCCCCAGTTTGTCCAATTCCGAATTGCTG
ACTTTGGCACCCCCCCCCGTTAAAGAAAAAATTCAGTCCCCTGTACTTCT
CAGGTCCCCTTATTTTATGTTGTTCTTCTTTCGCTGAGATATTTGTATCA
TCTATCTATTACCTTCAATTAACCTTAACACTCCACATACTTGGATCGAA
TTATTCTATTTTTAAACACATCTGCTCATATTCTAATTATTCCCTGGAAC
CCTCCATCGTTTTTCTTACTGCGTTTGTTTCCAGCTTCTACTCTCTCCTT
CACATTGTTTCACCGCCCCCCCCTCTTTTTTTTTTTTTTTTTTTCTCGTT
TTTTGTCCCTCCATTCTCAGTAGTATATAAAAAAGCTCCCATATCCCGTA
CCATACTTTTTTTTCCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_g09.g1 MSMg01no319_g09.g1 CHROMAT_FILE:
MSMg01no319_g09.g1 PHD_FILE: MSMg01no319_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:44 2005
         (167 letters)



>mm_chr7_79535865_79536434
          Length = 570

 Score =  197 bits (102), Expect = 2e-55
 Identities = 146/162 (90%), Gaps = 3/162 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgaaaaacaagaggcaaaaatatcaaacagaaatgacttgaagggaaaattcattta 60
           ||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||||
Sbjct: 201 atatgaaaaacaagaggcaaaaatatcaaacaggagtgacttgaaggcaatattcattta 260

                                                                       
Query: 61  agatttgttaataaagtgttcacgacattatttttcatgattaccccaatttgcaaataa 120
           |||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 261 agatttgtgaataaagtgttcgcgacattatttttcatgattacccaaatttgcaaataa 320

                                                     
Query: 121 cctttatatctttgggggagggggg---aatggatgccattg 159
           ||   ||||||| ||||| || |||   ||||||||||||||
Sbjct: 321 ccaaaatatcttggggggtggagggcaaaatggatgccattg 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 570
Length adjustment: 8
Effective length of query: 159
Effective length of database: 562
Effective search space:    89358
Effective search space used:    89358
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)