BAC Information

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BAC

Clone NameMSMg01-319K07
Chromosome7 (Build37)
Map Location 66,000,076 - 66,000,351
singlet/doubletsinglet
Overlap geneAtp10a
Upstream geneGabrb3, EG668807, LOC434189
Downstream geneLOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319K07.T7 (MSMg01no319_k07.b1)MSMg01-319K07.TJ (MSMg01no319_k07.g1)
ACCAG439106AG439107
length730925
length of high quality
(start - end)
280 (129 - 408)---
definitionCHROMAT_FILE: MSMg01no319_k07.b1 PHD_FILE: MSMg01no319_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:01 2005CHROMAT_FILE: MSMg01no319_k07.g1 PHD_FILE: MSMg01no319_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTGTTATACAATACATTCATATTTGTGCATCACATTTGTTATG
GTCTCTTATAATGCCTTTGCCGCTGAGATCCAGTAAACACTATTTTTAAA
ATTTTTCATGCTCTAAAACAATGAATTCTATGAAATAATGATCATCTCAT
TGTGTTACCAGTGTGAAATAAATAAGGCAAATGCAGAAACTCTGCCTACC
ATATTTAAAACTGCTGGTCCAGGTGGAGCTGGAACAAGCAGGTACTGTCT
GAACCATCAGGGAGGGGTCAGAATCATTCAGGATTTCTCTGGGTTTTCCA
ACCATTCACACATACCTGCAGGCCTAGCCTGAAGCTCTGTCAATTCCACT
GAAGTCCAGGGAAGAAGTTCTACCCCCCCAGAAATAGTTGTATGCACAGC
TCTGCAGAATAAGGTATTCTCTAAGCATTACAAGTCATATACAACTTTGC
AGATGTTAACACAATTCAACAAATATTTATAGAGCATCTGTTAAGCATCA
AAGGTGCAATCAATCAAAACTAGAAGCATTTTCTTCTGGCATTCATATTA
TCTATGGAAGGTAGTGAATGGGGTGGAAGGCGGAAATTAAACATAATTAG
CTTCTTGTTCCTTTTACACTGACTTACTTCTTATTATCCTTTATACCTTT
CATTTTACTTCATCATTTTTTTTTTTTCTC
CTTTGNTTAANCCTGNCGNCCGCCTGTCTTCCAACATTTANNTGACNCTA
TANAATTTTTCCCCAAAATTCCTTCCTTAGATTACTAGAGAACTTTATTA
AAATAAGAATTTGCTGTTTTTNCCCCCTATTACCCAGNTCATGTAANTAA
TAATAATAGATATTAGGGAAGTGGGGTTGGGGGTGGTTTGTCTTTTTGNT
AATATTTCAAATTTTTCAAACTCTTTTNTTANNNTTTTGNNCNTTGTTTT
TTTANNTGNNAATGTTTCCNAANNGNNTCCTGNATTTTTTCCCCCTTTTT
TTGCTTATTTTAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAATAAAAA
AAAGAAAAAAAAAAANTTTTCTCCCNNNNTTTNNNTTNNCNTTNTTTCTC
TTTTCTTTTTTTCNTTTTTTTTTTTTCTCCTTTTTTTTTTTTTTTTTNCT
TTTTTTTTTATTTCTCCCCCCCCCCCCNNNNTTTTTTNNNTTNNNNNNCC
TTTTTTCTTTCCCNTTTTCTTATTTTTTTTCTCCTCCTTTTTTTTTTTTT
CTCTCTCTTCTTTTTNCNNTNTTCTCTAATATTGGGCTTTTTTTTNNNNC
NTTTTTTNTTTTTTTTTNTTTTTTTCCCTTTTTTTTTTCCCTNCTTCTCT
TTTCTTNTCTTTTTTNTTTTCNCTTCCNCNCTTTCCCTCCTTCTTCTCTN
TCTTTTTCTTTTTTTCTCCTNCTTCCTTCTTTTTCTTTTTTTTTCTTTTT
TTTCCTCCCTTTTTCTTTTCTTCNCCTCCCCTTCTTTTTTTTTTTCTCCC
CCCTTTTCTTTTTTTATAAATAATAAATGGTTTTTCTTTNTTNNTNCCNC
TNCCCCTNNNCTTCTCCTCTCTTTCTCCTCTTTTTCTCCCTTCTTTTCTT
TCCATTATTTATTTATTATTAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_k07.b1 MSMg01no319_k07.b1 CHROMAT_FILE:
MSMg01no319_k07.b1 PHD_FILE: MSMg01no319_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:01 2005
         (280 letters)



>mm_chr7_65999876_66000555
          Length = 680

 Score =  495 bits (256), Expect = e-144
 Identities = 271/276 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagtaaacactatttttaaaatttttcatgctctaaaacaatgaattctatgaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccagtaaacactatttttaaaatttttcatgctctaaaacaatgaattctatgaaataa 260

                                                                       
Query: 61  tgatcatctcattgtgttaccagtgtgaaataaataaggcaaatgcagaaactctgccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 261 tgatcatctcattgtgttaccagtgtgaaataaataaggcaaatgcagatactctaccta 320

                                                                       
Query: 121 ccatatttaaaactgctggtccaggtggagctggaacaagcaggtactgtctgaaccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatatttaaaactgctggtccaggtggagctggaacaagcaggtactgtctgaaccatc 380

                                                                       
Query: 181 agggaggggtcagaatcattcaggatttctctgggttttccaaccattcacacatacctg 240
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 agggaggggtcagaagcattcaggatttctctgggttttccaaccattcacacagacctg 440

                                               
Query: 241 caggcctagcctgaagctctgtcaattccactgaag 276
           |||||||||||||||||| |||||||||||||||||
Sbjct: 441 caggcctagcctgaagctgtgtcaattccactgaag 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)