BAC Information

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BAC

Clone NameMSMg01-319M01
Chromosome7 (Build37)
Map Location 136,807,751 - 136,808,091
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a, Brwd2
Downstream geneLOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319M01.T7 (MSMg01no319_m01.b1)MSMg01-319M01.TJ (MSMg01no319_m01.g1)
ACCAG439182AG439183
length717702
length of high quality
(start - end)
452 (49 - 500)342 (74 - 415)
definitionCHROMAT_FILE: MSMg01no319_m01.b1 PHD_FILE: MSMg01no319_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:08 2005CHROMAT_FILE: MSMg01no319_m01.g1 PHD_FILE: MSMg01no319_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGTACCAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATGATTAGGCCAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACGTCTCCTG
GGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTACCCCACCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCTAGTC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCTCC
AAGGAACTCACACAATACGTACTCACTGATAAGTGTATATTAGCCCCAAA
CCTAGGATACCCCTGATATCAGATACCCTTTGCCTAAACTCATGAAACTC
ACGACAATTGATGACTG
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTTTCAGGTAGGGTAATATACCTGAG
GCTAGACAGTCACTGTATAACCCCATGCTTTAAGTCACCAGGAAGTCACA
AGGTCCAGGAAGTCAGTTCCGGGATTTGTTCTTTTTCTAGAGAGGGGCCA
TCTAGGTGTGATTGTGCAATTTTTGTCTGTGATATTGCACAAGTCCAAAG
TCCTTTCTAAGGGCCCAGGGGAGCCCTTATCTTTCTGGATAATCCTCCTG
TCTGCTGCTACTGGCTATAATGAGATACTCTAGCCCCAGGGGTTTTCCTG
CTGCCTCCTGGTCCTGCTGCCTACCCCTGAGGTACACCTGCAGCCCTCAG
TCTCCTGACCTGGGCTGCCCCCAACAGGTGCTGCAGCCTCTGGCACCGAC
CACCACTCCACAGCATTCCTGTGTCCCTGTGTCTCTCAGCTGGTCCAGAC
TGGCAGCCCCCCTAGCTAGCTCTGCATACCTCAGCAGAAGCTGGCAGCTC
AGGCCAGTCCTTCTCCTGGGATGGTCCCGTTCGCTGCCTCATGTGAGAGC
CTGCCTGTTAAGGTGACGCGCCTTACAAATATTACCGGATGCTGCTCTGA
ACTCTTTGGCAGTCAGGTCCCTCGCGCGCGATGAGCGTTGACTGTGAGGC
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_m01.g1 MSMg01no319_m01.g1 CHROMAT_FILE:
MSMg01no319_m01.g1 PHD_FILE: MSMg01no319_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:08 2005
         (342 letters)



>mm_chr7_136807551_136808291
          Length = 741

 Score =  630 bits (326), Expect = 0.0
 Identities = 338/342 (98%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttcaggtagggtaatatacctgaggctagacagtcactgtataaccccatgctttaa 60
           |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||
Sbjct: 541 actttcaggtagggtaatatacctgaggctagacagtcactg-ataagtccatgctttaa 483

                                                                       
Query: 61  gtcaccaggaagtcacaaggtccaggaagtcagttccgggatttgttctttttctagaga 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtcaccaggaagtcacaaggtcccggaagtcagttccgggatttgttctttttctagaga 423

                                                                       
Query: 121 ggggccatctaggtgtgattgtgcaatttttgtctgtgatattgcacaagtccaaagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggggccatctaggtgtgattgtgcaatttttgtctgtgatattgcacaagtccaaagtcc 363

                                                                       
Query: 181 tttctaagggcccaggggagcccttatctttctggataatcctcctgtctgctgctactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tttctaagggcccaggggagcccttatctttctggataatcctcctgtctgctgctactg 303

                                                                       
Query: 241 gctataatgagatactctagccccaggggttttcctgctgcctcctggtcctgctgccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gctataatgagatactctagccccaggggttttcctgctgcctcctggtcctgctgccta 243

                                                     
Query: 301 cccctgaggtacacctgcagccctcagtctcctgacctgggc 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cccctgaggtacacctgcagccctcagtctcctgacctgggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space:   243756
Effective search space used:   243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)