BAC Information

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BAC

Clone NameMSMg01-320A19
Chromosome7 (Build37)
Map Location 87,960,020 - 88,116,851
singlet/doubletdoublet
Overlap geneLOC100042402, Zscan2, Wdr73, Nmb, Sec11a
Upstream geneAnpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1
Downstream geneZfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320A19.T7 (MSMg01no320_a19.b1)MSMg01-320A19.TJ (MSMg01no320_a19.g1)
ACCAG439394AG439395
length729728
length of high quality
(start - end)
326 (128 - 453)640 (75 - 714)
definitionCHROMAT_FILE: MSMg01no320_a19.b1 PHD_FILE: MSMg01no320_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:29 2005CHROMAT_FILE: MSMg01no320_a19.g1 PHD_FILE: MSMg01no320_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,960,020 - 87,960,345)(88,116,366 - 88,116,851)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCTCCAAAGAGTTCCCATGAACAAGAAATAAACTTGTAAAAGTTTGAT
CTTCCTACTAATTAAGGAAATGTATCTTAGACCCATAATAAGATATCACT
TTGCACACATCATATTTGCTGGTCTGACAAAATCAAGGGTTTACTGATGC
CTGCTGCTGAGAAAGGAACTCAATACAACCACTTCGGTTGATAAATTGAA
AATAATCTGATCAGTTACACACTTATGCTTTGCCCTCAGAACTCTATTCC
CAGAGAAATGTTTACATAAGATGTACCATACAAAACATTCAAGAAAAATG
TCTGTAACACTGACCCCTCCTGAAGTGACCTGAATGACAGCAGGAAAATG
AATAAGCCACAGGGTACGTTCTGAATATTAATGCTGCAAAAATGAGTGAA
AACATAAGGACTTACCTTAATGCAGATAGCCCTCTTCATAAACTGGTGCA
GATAGCCCTCTTCCCTGTGACATTGAAATGGAAGAACCAGGAATCATGGT
TCACACCTGAAATCCTAGTACATGAGAGTGTGAGGCAGGAGGATTACGGG
AAGTTTGAGGCCAGCCTGAATTTTACAAGGAGATCTAGACCAGCCTGGGC
TACAGGATGAGATTCTGTCTCAAACAAAATATTGATGGATAAAACACTCA
TGATACTTAATTTGAAACCCATCAGAAAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTAGATAGCACTCCAGTTCTACTC
AACTAGAAGCTAAGAAATCTGACTACTGTGGGATACTCATGGCGCTGAAT
CAAGGTCCAAGGAACAAGGTGCTACCGACTGGTGCATGGTTTTGATCATC
AGGGAGAAATTGAAAGTCTATTCCACAGTGAAGGAGAGACATATAGCTGG
AAAAAGCGGGTCCTGAGAACTCTTAGGTTCCCACATAAGTGGAATTAATC
CAATTCAGGGACCTATGACACTAATCTAACCGTTCAGTAGCAAAGGTCTG
AGTCACCATATGTGGTGGTTTGAACATGCTTGGCCCAGGGAGTGGCACTA
TTTGGTGGTGTGGCCTTGTTGGAACAGGTGTGGACTTGTTGGAGGAAGTG
AGTCACTTTGGACATGGGCTTTAAAGCCCTCATCTCAGCTGCCTGGAATC
CAGTCTTCTCCTAGCTTCCTTCAGAACAAGAGGTGGAACTCTCAGTTCCT
CCTGCACCAAGCCTGCCTGAACACTACCATGCTCCCACCTTGATGATAAT
GGACTGAATCTCTGAACCTGTAAGCCAGCCTCAATTAAATAGTGTTCTTT
TAAGATTTGTCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAACT
AAGATACCCTATCATGAAAGAAACTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_a19.b1 MSMg01no320_a19.b1 CHROMAT_FILE:
MSMg01no320_a19.b1 PHD_FILE: MSMg01no320_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:29 2005
         (326 letters)



>mm_chr7_87959820_87960545
          Length = 726

 Score =  630 bits (326), Expect = 0.0
 Identities = 326/326 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagacccataataagatatcactttgcacacatcatatttgctggtctgacaaaatcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagacccataataagatatcactttgcacacatcatatttgctggtctgacaaaatcaag 260

                                                                       
Query: 61  ggtttactgatgcctgctgctgagaaaggaactcaatacaaccacttcggttgataaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtttactgatgcctgctgctgagaaaggaactcaatacaaccacttcggttgataaatt 320

                                                                       
Query: 121 gaaaataatctgatcagttacacacttatgctttgccctcagaactctattcccagagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaataatctgatcagttacacacttatgctttgccctcagaactctattcccagagaa 380

                                                                       
Query: 181 atgtttacataagatgtaccatacaaaacattcaagaaaaatgtctgtaacactgacccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtttacataagatgtaccatacaaaacattcaagaaaaatgtctgtaacactgacccc 440

                                                                       
Query: 241 tcctgaagtgacctgaatgacagcaggaaaatgaataagccacagggtacgttctgaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctgaagtgacctgaatgacagcaggaaaatgaataagccacagggtacgttctgaata 500

                                     
Query: 301 ttaatgctgcaaaaatgagtgaaaac 326
           ||||||||||||||||||||||||||
Sbjct: 501 ttaatgctgcaaaaatgagtgaaaac 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no320_a19.g1 MSMg01no320_a19.g1 CHROMAT_FILE:
MSMg01no320_a19.g1 PHD_FILE: MSMg01no320_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:29 2005
         (640 letters)



>mm_chr7_88116366_88117405
          Length = 1040

 Score =  862 bits (446), Expect = 0.0
 Identities = 476/486 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttagatagcactccagttctactcaactagaagctaagaaatctgactactgtgggat 60
           ||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 486 tcttagatagcacaccagttctactcaacaagaagctaagaaatctgaatactgtgggat 427

                                                                       
Query: 61  actcatggcgctgaatcaaggtccaaggaacaaggtgctaccgactggtgcatggttttg 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 426 actcatggcgctgaatcaaggtccaaggaacaaggtgctaccaactggtgcatggttttg 367

                                                                       
Query: 121 atcatcagggagaaattgaaagtctattccacagtgaaggagagacatatagctggaaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 366 atcatcagggagaaattgaaagtctattccacagtgaaggagagacgtataactggaaaa 307

                                                                       
Query: 181 agcgggtcctgagaactcttaggttcccacataagtggaattaatccaattcagggacct 240
           || ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 306 agtgggtcctgagaactcttaggtgcccacagaagtggaattaatccaattcagggacct 247

                                                                       
Query: 241 atgacactaatctaaccgttcagtagcaaaggtctgagtcaccatatgtggtggtttgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atgacactaatctaaccgttcagtagcaaaggtctgagtcaccatatgtggtggtttgaa 187

                                                                       
Query: 301 catgcttggcccagggagtggcactatttggtggtgtggccttgttggaacaggtgtgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 catgcttggcccagggagtggcactatttggtggtgtggccttgttggaacaggtgtgga 127

                                                                       
Query: 361 cttgttggaggaagtgagtcactttggacatgggctttaaagccctcatctcagctgcct 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cttgttggaggaagtgtgtcactttggacatgggctttaaagccctcatctcagctgcct 67

                                                                       
Query: 421 ggaatccagtcttctcctagcttccttcagaacaagaggtggaactctcagttcctcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  ggaatccagtcttctcctagcttccttcagaacaagaggtggaactctcagttcctcctg 7

                 
Query: 481 caccaa 486
           ||||||
Sbjct: 6   caccaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)