BAC Information

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BAC

Clone NameMSMg01-320G18
Chromosome7 (Build37)
Map Location 37,165,674 - 37,322,083
singlet/doubletdoublet
Overlap genenone
Upstream geneRhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320G18.T7 (MSMg01no320_g18.b1)MSMg01-320G18.TJ (MSMg01no320_g18.g1)
ACCAG439658AG439659
length758755
length of high quality
(start - end)
227 (184 - 410)277 (138 - 414)
definitionCHROMAT_FILE: MSMg01no320_g18.b1 PHD_FILE: MSMg01no320_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:56 2005CHROMAT_FILE: MSMg01no320_g18.g1 PHD_FILE: MSMg01no320_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,165,674 - 37,165,900)(37,321,808 - 37,322,083)
sequence
TTTTTTTTTTTTTTTTTTTTTTTCTCTTTCTTTTTTTCCCCCACNCCNTC
NNNNNNCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATATTCTGTAGATGCTGTCTATGTGTCCTGTCCTG
CTGTTTGAAAGAGCTGTGGATTTTATCCATTAGCTCCTAGCTGGTGGTAG
AGTGGGAGCAACCACATCTGCCCCAGGCTCTGTCTTGCCTGAGCAAGCCC
ACCAACCAGCTCGTTCCGGGAATGCATGGCTCCTGCCTTGACGCTGGAGC
CTGAGAGAAGAGGTGTGACTGGTGCTATGTGTACTTGGCGTGTGGCTTGT
GTGTTACCTGTGAGCCACAGAATCTCCCTTTGTTCTGTGTGCAGTGGAGA
AGAAAGAGGGTTTTTTTTGAACGCGCCCGCCCAAAATTTTGATCTGTGCC
TGGATGCCATTGCCCTACAATGAACATTGATGACTATCGCTTTCACTTGA
GGATCATTCTGATGCTGCCAGTCAGATTTGGAGAGGCTAGTTCCTGTGCT
GATCCATTCAGGGGTGGAGACAGGAGTCCACAATAGTGTCTATTGCATAA
CTGTATTAAGCGGCTGGCAAGCCTTCACCATGAGATGGAGACCTTTGTCC
AACAGCGTTGCCATAATAATATAAAAGCTTGGCCGGAATCCTTGGGAGTG
TGTTTGTGCACATCACCGGACTTTATGATAGTTGCCCTCCACCTGCTTCC
TATTAAAN
TCGGGCCCCGCGGCCCCCTTCTCCTTCTGGTTGTTTTCCTTACCNNCTTT
NCCNNNTCCATCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTAGATTCATT
TTTTTTTCTTCTCTTTGCTTTGTTATGTGCCGGCCAGGTGTCACATTTCT
CTAGTTTGAGGACGGGGCTTCACATATGTGATCCTGAATGGCTCTCTCTG
GCAACACATGCTTTGTGTCACATGACAGTAAAACGACACTTTTTAAAACA
TGGCTTTCTTGCTAGGTGTGAGTGGGGCTTAAGGAATGGCCAGATGCATG
TTCTGTAGGTTGGCCAGGAGTCACCTATACCCTCTGGAAGCTGATGATAG
GGGAGAGAGGATGTTTNNCTCANTGCCTAAACGGATCCACTCCAGGCTCC
CGGGTTCTCTGCTTTCTACTGCACAAACAATTGACCAAAAGATTTAGTTT
TGTTCTATGGTTCTGGCAATGAATCCCAGGACCTCTGCATTGCTAGAGAG
GTGCTTTATCTCTGAGCCAAACCCCAGACCCTCTCCGGTAGATTCTAGGC
AAGTGCTCTACCACTAAGCTACCTCCTTCACTCTTCACTGGATAACTCTA
GCCTGGTGCTCTATTACGGAGCCACACTCCCATTTCTGTAATGATGGATT
CTAGAAAGCTCCCTACCATGGAGATGCAGCCTTGTTTTCACTTTCCCATG
ATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_g18.b1 MSMg01no320_g18.b1 CHROMAT_FILE:
MSMg01no320_g18.b1 PHD_FILE: MSMg01no320_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:56 2005
         (227 letters)



>mm_chr7_37165474_37166100
          Length = 627

 Score =  408 bits (211), Expect = e-118
 Identities = 223/227 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctagctggtggtagagtgggagcaaccacatctgccccaggctctgtcttgcctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcctagctggtggtagagtgggagcaaccacatctgccccaggctctgtcttgcctgag 260

                                                                       
Query: 61  caagcccaccaaccagctcgttccgggaatgcatggctcctgccttgacgctggagcctg 120
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 261 caagcccaccaaccagctcgttccgggaatgcatggctcctgctttgatgctggagcctg 320

                                                                       
Query: 121 agagaagaggtgtgactggtgctatgtgtacttggcgtgtggcttgtgtgttacctgtga 180
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 321 agagaagaggtgtgactggtgctatgtgtacttggtgtgtggcttgtgtgctacctgtga 380

                                                          
Query: 181 gccacagaatctccctttgttctgtgtgcagtggagaagaaagaggg 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccacagaatctccctttgttctgtgtgcagtggagaagaaagaggg 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no320_g18.g1 MSMg01no320_g18.g1 CHROMAT_FILE:
MSMg01no320_g18.g1 PHD_FILE: MSMg01no320_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:56 2005
         (277 letters)



>mm_chr7_37321608_37322284
          Length = 677

 Score =  464 bits (240), Expect = e-135
 Identities = 267/276 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttagattcatttttttttcttctctttgctttgttatgtgccggccaggtgtcacatt 60
           ||||||||||||||||||||||||||||||||||||||||||  || || ||||||||||
Sbjct: 476 atttagattcatttttttttcttctctttgctttgttatgtgatggtcaagtgtcacatt 417

                                                                       
Query: 61  tctctagtttgaggacggggcttcacatatgtgatcctgaatggctctctctggcaacac 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 416 tctctagtttgaggacggggcttcacatatgtgatcctggatggctctctctggcaacac 357

                                                                       
Query: 121 atgctttgtgtcacatgacagtaaaacgacactttttaaaacatggctttcttgctaggt 180
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 356 atgctttgtgtcacatgacagtaaaatgacactttttaaaacatggctctcttgctaggt 297

                                                                       
Query: 181 gtgagtggggcttaaggaatggccagatgcatgttctgtaggttggccaggagtcaccta 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 296 gtgagtggggcttaaggaatggccagatgcatgttctgtgggttggccaggagtcaccta 237

                                               
Query: 241 taccctctggaagctgatgataggggagagaggatg 276
            |||||||||||||||||||||||||||||||||||
Sbjct: 236 gaccctctggaagctgatgataggggagagaggatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)