BAC Information

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BAC

Clone NameMSMg01-320H06
Chromosome7 (Build37)
Map Location 88,876,855 - 89,034,532
singlet/doubletdoublet
Overlap gene2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3
Upstream geneIqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2
Downstream geneBnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320H06.T7 (MSMg01no320_h06.b1)MSMg01-320H06.TJ (MSMg01no320_h06.g1)
ACCAG439681AG439682
length732742
length of high quality
(start - end)
263 (434 - 696)227 (128 - 354)
definitionCHROMAT_FILE: MSMg01no320_h06.b1 PHD_FILE: MSMg01no320_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:58 2005CHROMAT_FILE: MSMg01no320_h06.g1 PHD_FILE: MSMg01no320_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,034,270 - 89,034,532)(88,876,855 - 88,877,081)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGGTGACACTTTGAGGACTGTCAGCTGCACTGCATGTGAGGAT
GACTTCTTTATCCTTTTCTCCTAAACCTTTTAGTTCTTGTGTATAGTAGG
GCCTTAACGGTCATTGCATTAAGAACTTGTCTAGTTTCCTTCTGTTGCTG
TGACAAACACTGACCAAAAACACCTTGAGGAGGAGAGGGTTTATTTGGCT
TACATTGCAGGTCACAGTCTGTTATTGAGGGATGTCAGGGCAGGAACTCA
AGCAAGGCAGGAGCTTGATGAGGAAACGACAGGGGAATGTTGTTTGTTGG
CTCACTCATTTTTTTTCCCCTCCCCCCCAGCCAGCTAGCTTCCTTATATA
GCCCAAGACCACCTGTGTAGGAATAGAACTGGCCACAGTGCGCTGCGCTC
TACCACATCAATCATCAGTCCAAGACAGTTGCTCCCAAACATGGCCATAG
ATAACCTGATCTGGGTAGTCTCTCAGTTGAGACCCTCAGATAATTCTAGG
CTGTGTCAGGTTGACAGCTGATGTTAACAATGACAGAATCTGAACTTTTT
ATGTTTTGGTTCAGTCAAGTCTCTTAGACTACTTGACACTCAGGTAGCTT
TCACTTGTTTGCAAATACTGGTTATTACTTCTTTACGCTACTGCTTTGTT
GTGGTTTACTGCTCCATGTATTGATGAATTTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTTAAAGGAGACCTTTATGC
ATTATGGAGACCTACTTTTACCCAAAGGTGTGTACTGGTAAAAACATCAA
TCAAAAGAAACCCTAGGTGACTGGAGATCTCCACCTAAGTCATGGGTTTT
GGTCCTTTTTCGTTTGTTTGTTTGTTTGGTTTGGTTTTTGGATTTTCAAG
ACCGGGTTTCTCTATGTAACCCTGGCTGCCCTGGAACTCACTTTGTAGAC
CACGCTGCCCTTGAACTCAGAAATTCTTCTGCCTCTGCCTCCCGAGTGCT
GGGATTATATTTTTGTGCCACCCTCGCCCAGCTGTTGGTCCTTTTACCAA
GCCCTGTGGTGGTTGGCATTTTTCAAAAAGAACAATGTGGTGGTGGGGCT
TCAACGTGTATTTGGTTAGTGATGTTGAAATTCCAGGATGTTAGCCAGTG
GCAGTTATAGATCACAACCAGGAGGGTGGAGCAACTTTTTTTTTTAATGC
TCCCACTAACTCTAACCAACTACTGCCTAATGCCTGCCTAACTCCTACCT
CAAAAACAGATTCAAATAAAATAAAGCAGACACACGAAAGATAAGTTTTA
GGTCTATGGCAGGGTGATAGGAGGAAGTGAATGTGAAAAGATTTATCAGA
TGTAAAACTAGATGAATAATCAGGAGACCACAATGGCAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_h06.b1 MSMg01no320_h06.b1 CHROMAT_FILE:
MSMg01no320_h06.b1 PHD_FILE: MSMg01no320_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:58 2005
         (263 letters)



>mm_chr7_89033937_89034599
          Length = 663

 Score =  485 bits (251), Expect = e-142
 Identities = 260/263 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtgcgctgcgctctaccacatcaatcatcagtccaagacagttgctcccaaacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cacagtgcgctgcgctctaccacatcaatcatcagtccaagacagttgctcccaaacatg 537

                                                                       
Query: 61  gccatagataacctgatctgggtagtctctcagttgagaccctcagataattctaggctg 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 536 gccatagataacctgatctgggtagtctctcagttgagaccctgagataattctaggctg 477

                                                                       
Query: 121 tgtcaggttgacagctgatgttaacaatgacagaatctgaactttttatgttttggttca 180
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 476 tgtcaggttgacagctgatgttaacagtgatagaatctgaactttttatgttttggttca 417

                                                                       
Query: 181 gtcaagtctcttagactacttgacactcaggtagctttcacttgtttgcaaatactggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gtcaagtctcttagactacttgacactcaggtagctttcacttgtttgcaaatactggtt 357

                                  
Query: 241 attacttctttacgctactgctt 263
           |||||||||||||||||||||||
Sbjct: 356 attacttctttacgctactgctt 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no320_h06.g1 MSMg01no320_h06.g1 CHROMAT_FILE:
MSMg01no320_h06.g1 PHD_FILE: MSMg01no320_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:58 2005
         (227 letters)



>mm_chr7_88876655_88877281
          Length = 627

 Score =  416 bits (215), Expect = e-121
 Identities = 224/227 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtgtactggtaaaaacatcaatcaaaagaaaccctaggtgactggagatctccaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtgtactggtaaaaacatcaatcaaaagaaaccctaggtgactggagatctccaccta 260

                                                                       
Query: 61  agtcatgggttttggtcctttttcgtttgtttgtttgtttggtttggtttttggattttc 120
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 261 agtcatgggttttggtcctttttcgtttgtttgtttggttggtttgatttttggattttc 320

                                                                       
Query: 121 aagaccgggtttctctatgtaaccctggctgccctggaactcactttgtagaccacgctg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaccgggtttctctatgtaaccctggctgccctggaactcactttgtagaccacgctg 380

                                                          
Query: 181 cccttgaactcagaaattcttctgcctctgcctcccgagtgctggga 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccttgaactcagaaattcttctgcctctgcctcccgagtgctggga 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)