BAC Information

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BAC

Clone NameMSMg01-320K13
Chromosome7 (Build37)
Map Location 51,605,855 - 51,606,144
singlet/doubletsinglet
Overlap geneShank1
Upstream geneSiglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a
Downstream gene1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320K13.T7 (MSMg01no320_k13.b1)MSMg01-320K13.TJ (MSMg01no320_k13.g1)
ACCAG439835AG439836
length769727
length of high quality
(start - end)		290 (75 - 364)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no320_k13.b1 PHD_FILE: MSMg01no320_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:13 2005CHROMAT_FILE: MSMg01no320_k13.g1 PHD_FILE: MSMg01no320_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGG
AATTCTCTGGGGAATCACTCAAGAGAAAGAAAAGAAAAGCAGGCAGCCGA
GCAGTCCCACTAAAGCAGGTTTCACCCGCAGTCGTGGCCTGTACCCAGGT
CCCATTGACACTCTTCTGGCCTGTGGTGGCAGCCACCCCTCTGGCTTTGT
TGTTTCCTCTCTCCTTCACTCCTTTCTGGTCTCTTTTCCAGAGTTGGCGG
AATCTTTCAAAAAAGAAATCAGGGCTGGAGCGATTGCTCAGTCAGTAATA
CGCTTTGCCACACATACAGACATGATGATCCAGTTCTGATTCCCAGCAGC
TGCAGCTCACGTCATATTTTAATTTGTGCCCCCCCCCCCTATGTGTGTGT
GTGTGTGTGTGTGTGTGNGANCCCCCCCTTATAAAAAAAAAAAAAACAGT
TGGTGGTTGAATTGTTATTCACTTCTCCTTATTCCTTACACACAAATGGC
AATAGAATAAGGGAAAAATATTTCGCATATTAATTATATATTCTATTTAA
CAAAATTTCGTATATAATTTATACACATTCGAATTACAAAATATTTTACG
CAAAAAATTTCTGTGCCAATAAAAATATACGAAACTGGTCGGGCCAACCA
CCATTTAATCGAATATCGAATAAACACCCACTATATCTGTAACAGACAAC
TAACTGTATAAAAACATTTTCCAAACAACCACACCTCGGTTTCACCAACA
AACCTATTGTATATCCAAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGACTGCCAAACAGGGTTTTTTGAACTG
GCCTGAGGTTTTATGTTAATACCCCCTTAACTAGCTGAAGAAGAATCTGT
CCACAGAAGGGCAGAGACTGCCCCAAAGGCTAGACTGCAGTGTCTCAACC
AAGGGACATTGGAGGGTATTTCTTTGGTAGGGCTGGACCAAAAGATGAAG
AGTGACTTAGAACCATGTCCTCTGGGGCAGAGAATCACCCATCTTGGGAA
AAGGGCCACACTGCTGCTGCTGCACTGGACCACAAAACACTGTCTGTTTA
GAGGGACACAGCTAATTGTATCACACCACTCCCGCAGAAGGGTCCCTGCC
AATAGTCAGAAAAAAGTAGGCCTTAACGAGTGGAATTGGTCTTGCCACCT
GTGTGCTGAGGGTGCTACCTGCGCTCAGGGGAAGAATGGGACATCAAGGG
AGGTCTGATTGAAACTGATCCACAGGGACAGAGGTTGAGACATCTGGCTG
CAGGAACTCATCAGTGTCCTGAGAAGATGACAAGTCCCTCTGTTGGAGAG
TTCCATGGTAGTGCACAAAGCTGTTTACAACAGACAACCTCTGGACAGGC
TCCAAGTTCCTGTCCAAAATGGACTGCTGCTGCAACTTCAATGAGTGATG
TCCCCAGGCCCAACAGAAGTAGCTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_k13.b1 MSMg01no320_k13.b1 CHROMAT_FILE:
MSMg01no320_k13.b1 PHD_FILE: MSMg01no320_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:13 2005
         (290 letters)



>mm_chr7_51605748_51606437
          Length = 690

 Score =  522 bits (270), Expect = e-153
 Identities = 285/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagaaaagaaaagcaggcagccgagcagtcccactaaagcaggtttcacccgcagtcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||
Sbjct: 397 gaaagaaaagaaaagcaggcagccgagcagtcccactaaagcaggtaccacctgcagtcg 338

                                                                       
Query: 61  tggcctgtacccaggtcccattgacactcttctggcctgtggtggcagccacccctctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tggcctgtacccaggtcccattgacactcttctggcctgtggtggcagccacccctctgg 278

                                                                       
Query: 121 ctttgttgtttcctctctccttcactcctttctggtctcttttccagagttggcggaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctttgttgtttcctctctccttcactcctttctggtctcttttccagagttggcggaatc 218

                                                                       
Query: 181 tttcaaaaaagaaatcagggctggagcgattgctcagtcagtaatacgctttgccacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tttcaaaaaagaaatcagggctggagcgattgctcagtcagtaatacgctttgccacaca 158

                                                             
Query: 241 tacagacatgatgatccagttctgattcccagcagctgcagctcacgtca 290
           ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 157 tacagacatgaggacccagttctgattcccagcagctgcagctcacgtca 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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