BAC Information

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BAC

Clone NameMSMg01-322G02
Chromosome7 (Build37)
Map Location 116,032,303 - 116,032,647
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518
Downstream geneOlfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322G02.T7 (MSMg01no322_g02.b1)MSMg01-322G02.TJ (MSMg01no322_g02.g1)
ACCAG441092AG441093
length726731
length of high quality
(start - end)
345 (382 - 726)589 (76 - 664)
definitionCHROMAT_FILE: MSMg01no322_g02.b1 PHD_FILE: MSMg01no322_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:20 2005CHROMAT_FILE: MSMg01no322_g02.g1 PHD_FILE: MSMg01no322_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:20 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAGATTCTCAGATTATAATCGCAGACTAGATTACTTTTGGTATT
TTAAAATATATATAATCCTAAGCGTGTACTTTGATAACTTAGTACACTGT
TACTACAGTGTGGGATCTCTTTGGGTCAGCTGCCATGTTTTCCCTTAAGC
ATTTGTTTGTCTGTGGTGTTTGTCTGGACAAGAGGACCCACATTTCCCTA
TGAGCAGGAATGACTCAGGACATGCAGAAACGTTCCTCACAAACTTGCCG
CTCAGTGTTGTGCCAGGCAGATTTCATGACTCCAATCTGTACTTCATGTA
CAGAGCTCATGTAGTGTGCACACACTTTGAAGCTTGAAATATGTTGCCCC
ATGACACAGATTTCATCTTCTGACTGAAGAGGAGTTTTCTCTCCCCCTCT
TCTCTCCTGCTATCAGAACACTGGAGCTCACAGAACACAAGGTCTCACTC
TCCCAGGCTTCCCTGAAACTACAATAGAGTAGAGTTGAGTGATCTGTGGT
CATCCACACCTACTTTCTCTCTTCTGTCAAAACAGGTCCAGGGAAACTTT
ATAATCATCTTCCCACACAGCCCTCCTTGCTGGAACAAGAGGCCATGGCT
TTTGCCCTCCAGGGCATGGTGTGGTCATGGTTTGGTGTGCATGAGATGTA
AGAGTTGAAGGCTCTGCTGGCATCCC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTAAGGAATACCGAATGTCAG
AGAAGCACCTGAAAAAATGTTCACCATCCTTTATCATCAGAGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGTTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGTGGTTTCTCAGATAATTGGACATGTTACTACCGGAGGATCC
CCCAATACCTCTCCTGGGTATATATCCAGAGGATGTTCCAACTAGTAAGA
AAGAAACCTACTCCACTACGCGCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGAAAAGAACCCAGATGCCCCTCAACAGAGGAAAGGATACAAAAAAT
GTGGTACATTTTCACAATGGAGTCCTAGTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTATGCAAATGGTTGGACCTGGAGGGCATTATCCTGAGT
GAGGTAACCCAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAG
TGGATATTAGCCCAGACACTTAGAATACCCAAGATATAAATTACAATTTT
CAAAACATATGAAACTCAAAAAGAACGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_g02.b1 MSMg01no322_g02.b1 CHROMAT_FILE:
MSMg01no322_g02.b1 PHD_FILE: MSMg01no322_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:20 2005
         (345 letters)



>mm_chr7_116032103_116032847
          Length = 745

 Score =  636 bits (329), Expect = 0.0
 Identities = 341/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcttgaaatatgttgccccatgacacagatttcatcttctgactgaagaggagttttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gcttgaaatatgttgccccatgacacagatttcatcttctgactgaagaggagttttctc 486

                                                                       
Query: 61  tccccctcttctctcctgctatcagaacactggagctcacagaacacaaggtctcactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tccccctcttctctcctgctatcagaacactggagctcacagaacacaaggtctcactct 426

                                                                       
Query: 121 cccaggcttccctgaaactacaatagagtagagttgagtgatctgtggtcatccacacct 180
           |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 425 cccaggcttccctgaaactacaatagagtagagttgagtgatttgtgatcatccacacct 366

                                                                       
Query: 181 actttctctcttctgtcaaaacaggtccagggaaactttataatcatcttcccacacagc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 actttttctcttctgtcaaaacaggtccagggaaactttataatcatcttcccacacagc 306

                                                                       
Query: 241 cctccttgctggaacaagaggccatggcttttgccctccagggcatggtgtggtcatggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cctccttgctggaacaagaggccatggcttttgccctccagggcatggtgtggtcatggt 246

                                                        
Query: 301 ttggtgtgcatgagatgtaagagttgaaggctctgctggcatccc 345
           ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 245 ttggtgtgcatgagatgtaggagttgaaggctctgctggcatccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)