BAC Information

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BAC

Clone NameMSMg01-323C09
Chromosome7 (Build37)
Map Location 84,582,684 - 84,583,454
singlet/doubletsinglet
Overlap genenone
Upstream geneEG244071
Downstream geneA330068G13Rik, Ntrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323C09.T7 (MSMg01no323_c09.b1)MSMg01-323C09.TJ (MSMg01no323_c09.g1)
ACCAG441649AG441650
length1,2171,187
length of high quality
(start - end)		637 (85 - 721)770 (84 - 853)
definitionCHROMAT_FILE: MSMg01no323_c09.b1 PHD_FILE: MSMg01no323_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:22 2005CHROMAT_FILE: MSMg01no323_c09.g1 PHD_FILE: MSMg01no323_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCAGTCTTTTNNNNNCATTGGGCGNTAAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGAAGAGGACAGGACTATGCTGCTTTCTGGCTTCCTT
ATGTGGCTAACCCAGCTTACTTTCTTATACAAATCAGAACCACCTACCAA
TGGGTAGCTACATCTTCATATTAATTATAATTAAGAAAATTACCCCATAG
TTTTAACCATAGGCCAGTCTCAAAGGTCTATTTCTCGGTTGAGATTCCCT
CTTTCCAAATGACTCTAGCTTGTACTAAGTTGACAAACACTAGCCCACAC
CTAGACACTCATCACTGGAAAAGTTTTTCCAGATTTCTGAGTAAGAGATT
ATTAAAGTATGACCTGATGAGTTTTTTAATTTCTTTAGTATCTCTATAAT
GCCTCTATTGTCATCTATAGTTTCATTCCTTTATATGATCTCTCTCTCTT
TTATTTAATTTGTCTAAAGATTTGTCGATCTTGTAATGCTTTTACAAAAA
CAAACAAACAAACAAACAAACAATTCTTGGTTCCAATATTGTTCTTTTAC
CCATTTCTGTTTTACTAATTTCAGTCCTGAGTTTGACTACTTTTTTTTGT
CCAGTCTTTGGAGGAAATTGTGTGATCATGTGTTTCTAAAGCTTTGACAT
TTATCATTAAGTAATTATTATGATACTTCTTTAGTTTTTGATGGAGATAC
TTATTAGTATAACTCTTTGTTAGGAATGCCTTCATTGTGTCCCTTAGATT
TTTAATTCTAGATATAGATGAGACTAGATAAACAATTTCCGAAATAGAAA
CAAAACCAGTGGGAGTTCTATATAGTACAACACTGGTTTAGTCAACCAAA
AATTACAGCAGTCCCCAATCATAGTTATTCTTCTTCCTACATAACCGATG
GGAAGTTTGGAAAATGGGAGACTGAATATTTTATTCTTCTTTTTTTGGGA
AAATGGAATACCCCCGAGGATGAAATAATCTCCGGACCTAGGTCTTCCTC
CATGAAAACATAATATAAAAGTTACTGGGCTAGCTATCGGCCGGGTGTTA
TTTTTCCCTAGGCTTTGCTGGGGTTTTGGTAACCGCCCAAAAAATTGAAG
GCTAATACAAAGGTTGAGGGCGAAATTGGAAAAAATAGAATAACAAAACC
CCCACCCTACCTTCTTTTTGTNAAAAAAGCCATTGGCTCTGGGAAAGCCC
GGGTGAAATTTAGCCCG

NNCCCGGTCTTTTNNNNNAGCTAGGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGCATTCTTAAAGT
AAAAGATATTTTTCCCAGCATGAACTGAAGATGGCCAGGCAGGGGTAAAT
TACTCTGATGCACTGTCTTCTCAGAGAATGAATTAGGCAGAGGACATTGC
CCATGACTATCCCTAGAAGTGCACCTCATTATTTGAAAATGAAATAAAAC
AAAACAAAAGCCCCAAGCATGTCAGCTTTCATCTGTTTTCCATGAGATCT
GAGGTCCTTGGGATATTATGAAAATAGGAACACTGGAGAAGGTCATTGTG
TTTGAGATGTAATTCCTGTTTTTCTTTTTTACGGTAGTTTACTGTTTTCT
GGTTTGCTGTGACTTGGTAAAATTGGTACAAAATGTGAAAAATTTTACTG
AAATGGCAAACATTAAATAACTTATAATAAACACACATTTAAGTTTCCCT
AGTGTTTCCATTTGTGCTTGTGTGTAAGTACACAGCCTTCTTCATAGTTG
CCACTGTTTTCATTTCCTGGCCTCAATTACCATTGCCTCTCATTGCTGCA
TACTATGTATACAGAGTGGACTCTGAAAGCAGGACTTATATCCTGTTTGA
CGCTTTTACTCTTTATAACAGTGAGTGATAAAATTCCCCTTAATCTCTGT
GAAACCATCATCAAAAAGGACCATATAAACAACCCTCAGCTATTATCTGC
AGCTTTATGCTATTCCCTCGGCCTATCCTTCCTTTGGACCCTGAGTAGTC
ACTTATCTGCTCCTATTACTATACATTGATTCAAATATTTAAAGTCTCAT
ATAAATGAGTATATACATTTCCCATTTATTGGNTGGCTTTTCCCACCAAT
TATTAGCAAATCATTTTCTAATTTTTCTATATGGGTGGGGNATGAAATAT
GTTTCATGCATCAAAACCTTATGGGTTTTCTATGCTAGATGGAACCCTAC
TACTGAAATAAATTCCCGGGCCACTTGCCTTATTGTGGGTAATTTCTTGA
GGGAAGTTAACCTCTCTCTTTTTTTCGAACAAACAAAAATTTTTGTGGGG
GGAAAGGAAACATTTTTAAAATGGGGAAATTTGTTTTCAATATTGGAAAC
AAGGGGGCCCACCCCTGTCTTTCTGTGGGGAAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_c09.g1 MSMg01no323_c09.g1 CHROMAT_FILE:
MSMg01no323_c09.g1 PHD_FILE: MSMg01no323_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:22 2005
         (770 letters)



>mm_chr7_84582484_84583654
          Length = 1171

 Score = 1413 bits (731), Expect = 0.0
 Identities = 761/771 (98%), Gaps = 1/771 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagcattcttaaagtaaaagatatttttcccagcatgaactgaagatggccaggcagg 60
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 971 tgtagcattcttaaagtaaaagatatttttcccaggaggaactgaagatggccaggcagg 912

                                                                       
Query: 61  ggtaaattactctgatgcactgtcttctcagagaatgaattaggcagaggacattgccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 ggtaaattactctgatgcactgtcttctcagagaatgaattaggcagaggacattgccca 852

                                                                       
Query: 121 tgactatccctagaagtgcacctcattatttgaaaatgaaataaaacaaaacaaaagccc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 tgactatccctagaaatgcacctcattatttgaaaatgaaataaaacaaaacaaaagccc 792

                                                                       
Query: 181 caagcatgtcagctttcatctgttttccatgagatctgaggtccttgggatattatgaaa 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 791 caagcatgtcagctttcatctgttttccatgagacctgaggtccttgggatattatgaaa 732

                                                                       
Query: 241 ataggaacactggagaaggtcattgtgtttgagatgtaattcctgtttttcttttttacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ataggaacactggagaaggtcattgtgtttgagatgtaattcctgtttttcttttttacg 672

                                                                       
Query: 301 gtagtttactgttttctggtttgctgtgacttggtaaaattggtacaaaatgtg-aaaaa 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 671 gtagtttactgttttctggtttgctgtgacttggtaaaattggtacaaaatgtgtaaaaa 612

                                                                       
Query: 360 ttttactgaaatggcaaacattaaataacttataataaacacacatttaagtttccctag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ttttactgaaatggcaaacattaaataacttataataaacacacatttaagtttccctag 552

                                                                       
Query: 420 tgtttccatttgtgcttgtgtgtaagtacacagccttcttcatagttgccactgttttca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgtttccatttgtgcttgtgtgtaagtacacagccttcttcatagttgccactgttttca 492

                                                                       
Query: 480 tttcctggcctcaattaccattgcctctcattgctgcatactatgtatacagagtggact 539
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 491 tttcctgtcctcaattaccattgcctctcattgctgcatactatgtagacagagtggact 432

                                                                       
Query: 540 ctgaaagcaggacttatatcctgtttgacgcttttactctttataacagtgagtgataaa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctgaaagcaggacttatatcctgtttgacgcttttactctttataacagtgagtgataaa 372

                                                                       
Query: 600 attccccttaatctctgtgaaaccatcatcaaaaaggaccatataaacaaccctcagcta 659
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 371 attccccttaatctctgtgaaaccatcatcaaaaaggaccatataaacgaccctcagcta 312

                                                                       
Query: 660 ttatctgcagctttatgctattccctcggcctatccttcctttggaccctgagtagtcac 719
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttatccgcagctttatgctattccctcggcctatccttcctttggaccctgagtagtcac 252

                                                              
Query: 720 ttatctgctcctattactatacattgattcaaatatttaaagtctcatata 770
           |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttatctactcctattactatacattgattcaaatatttaaagtctcatata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 770
Length of database: 1171
Length adjustment: 10
Effective length of query: 760
Effective length of database: 1161
Effective search space:   882360
Effective search space used:   882360
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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