Query= MSMg01no323_d13.b1 MSMg01no323_d13.b1 CHROMAT_FILE:
MSMg01no323_d13.b1 PHD_FILE: MSMg01no323_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:31 2005
(275 letters)
>mm_chr7_132422804_132423478
Length = 675
Score = 478 bits (247), Expect = e-139
Identities = 268/275 (97%)
Strand = Plus / Plus
Query: 1 atcactgacctcaagctgtactacagagcaatagtgataaaaactgcatggtattgatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcactgacctcaagctgtactacagagcaatagtgataaaaactgcatggtattgatac 260
Query: 61 agtgagaggcaggtagatcaatggaatagaattgaagacccagaagtgaacccacacacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgagaggcaggtagatcaatggaatagaattgaagacccagaagtgaacccacacacc 320
Query: 121 tatggtcacttgacctgcttggattctatcctcaaaatccttagatcagtcgacagaagg 180
||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct: 321 tatggtcacttgatctgcttggattctatcctcaaaatccttagatcagttggcagatgg 380
Query: 181 ccttacaaacatctgagcaccactaaggaagggggagctggaaactccctttgccatgag 240
||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 381 ccttacaaacacctgagcaccactaaggaagggggaacgggaaactccctttgccatgag 440
Query: 241 aagtcagaaaagagtaggtaaccatagcccaggca 275
|||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtcagaaaagagtaggtaaccatagcccaggca 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no323_d13.g1 MSMg01no323_d13.g1 CHROMAT_FILE:
MSMg01no323_d13.g1 PHD_FILE: MSMg01no323_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:31 2005
(607 letters)
>mm_chr7_132588621_132589624
Length = 1004
Score = 984 bits (509), Expect = 0.0
Identities = 571/593 (96%), Gaps = 3/593 (0%)
Strand = Plus / Minus
Query: 15 attgttggtaaaatgacacccacaatcacccaaacacaggccacatgtaccagcctcaat 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 attgttggtaaaatgacacccacaatcacccaaacacaggccacatgtaccagcctcaat 745
Query: 75 ggcctcatatgttccagtataagtttctctcccacagtgcaacagttactaggccttaaa 134
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 744 ggcctcatatgttccagtataagtttctctcccacagtgcaacagttaataggccttaaa 685
Query: 135 gacatcttgctggccattgctttgcttttgaagttggtaggggctgtgtccttgtttgca 194
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 684 gacatcttgccggccattgctttgcttttgaagttggtaggggctgtgtctttgcttgca 625
Query: 195 aggtggccttctggtattctacattcacgtgtcaggcaaaaggcactgctttcaagtaat 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggtggccttctggtattctacattcacgtgtcaggcaaaaggcactgctttcaagtaat 565
Query: 255 gaccaggtgcgggttgcacaaaacaacgtttctctgtatccttaattctaaaaggtcttt 314
| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 564 ggccaggtgcgggttgcacaa---aacgtttctctgtagccttaattctaaaaggtcttt 508
Query: 315 aaataaaggcccatttggtggtgtacaaaacgacgctttttgtgaaagggtgtcacccaa 374
||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 507 aaataaaggcccatttgttggtgtacaaaacgacgctttttgcgaaaggatgtcacccaa 448
Query: 375 agggtgcaggatctaatctgtgtggttctatctggacttcctaagtgaactaagctgctc 434
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 447 agggtgcaggatctaatctgtgtggttctatctgggcttcctaagtgaactaagctgctc 388
Query: 435 acaccaaaaccaaaggagccaagaacggggccgaacggattcaagccttgcttcctaagt 494
|||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||
Sbjct: 387 acaccaaaaccaaaggagccaaaaacggggccgaacggaatcaagcctcgcttcctaagt 328
Query: 495 gcactttttggggatgcattacagaaaccttttttggttgccaagtgggatgctggatgc 554
||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 327 gcactttttggggatgcattacagaaaccggttttggttgctaagcgggatgctggatgc 268
Query: 555 cttagcatgaacaaccgtctagggaaagcacatgcagtccttctctcaaagta 607
||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 267 cttagcatgaacaacagtctagggaaagcacgtgcagtccttctctcaaagta 215
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1004
Length adjustment: 10
Effective length of query: 597
Effective length of database: 994
Effective search space: 593418
Effective search space used: 593418
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
