BAC Information

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BAC

Clone NameMSMg01-323I08
Chromosome7 (Build37)
Map Location 137,188,638 - 137,188,956
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043144, Ppapdc1a, Brwd2, LOC100043150
Downstream geneFgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323I08.T7 (MSMg01no323_i08.b1)MSMg01-323I08.TJ (MSMg01no323_i08.g1)
ACCAG441920AG441921
length1,1551,265
length of high quality
(start - end)
649 (135 - 783)356 (134 - 489)
definitionCHROMAT_FILE: MSMg01no323_i08.b1 PHD_FILE: MSMg01no323_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:09 2005CHROMAT_FILE: MSMg01no323_i08.g1 PHD_FILE: MSMg01no323_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAATTCNNNNNNNAAGCAGTGGGCGCTATAGACTCCTATANGGAGAGGA
TCCGCGGAATTCTGTGAAACTAGATGTTCCTTTAAGTACCGATTCTTAAA
CAATTAAAAAATTGAGGCCCTTGACACACCCCAGTCCTAATGTCCCAGGT
GCATGCTGTGTGTTCTCATCTTGGAAACAATGTAATAACTGCACAATGGG
AGTTTCAGATCAATGCTTGACTTGCAAAGAAAGTTTGAAGAAATTATTAG
AAAATTAAATAGAGCCAACATTGGAACACCAAGAAAGAAAAAAAACTATT
GAAGTTATGAAATAAGTTTTGCATAACATTTGAGAGTGGTTCCTGGATAA
AAAAGTATAGAATATGTAAAATCTTATAGTAGTAAAATTAAGTCAAAACA
CTGTTATTCTTAGGAGAGTCATTGTGTACAATGTGCAGAAGCAGAAAACT
AGCAGAACTACTGAGTTAAGGGTTAACTTGATTCTTTCTGGCCACTGTCT
GGCAGCTTTGCCCATGTCATTTGTCATTAGAGCTTCATAAGAAACTGCAA
GTAGCTGACCTCGGAGCTCAGACCTCTGAAGTATAATAAGTTAAAGTTTA
AATCATGATAAGTTTGCAATTATTACTATTTTAGCTATAGGCCTGGGAAT
ATGGAAGCTTGAAACTTTGGGGAGACAATTGTAATTCTTGAATCTTTGTG
GGACATTGTTATTCTTTTGAATTTGATATGGCAATGATTGTATAATGTCT
TTTTTTTAACCTGCTTTTAGAGTATCAATAAAAGACTGGGGCAAGAGAAA
GGCAAGAGAGAGAGTATAAGAGCATGTATAGAGCGAGTGAAGAGTGTGAG
GTGAACGTGTAAAGTGAATGTATAAAGGTAGAAAGAAAAAACATGAAAAA
ACCTTTGAAAAATGAGTGAAAAAAAAAATGTAATCATGTTTGGGGAATAT
TTGGTGTGAATTAAAAAAAAAACTCTTTGCGTTGTTTTGATTATCACTAT
TTTTTTCCTTATTTTTTCTTAATATCTCTTTCAATATATCTTTTTTAATT
TCATTTTTCATATATACTCTTTTATGTACTTTTTGCTATTTTCCTTCTTA
AAATATCTTTTATATTTATCTACCTACAATTCTAATATCTCTATTCTATA
TTATC
NCCCATCTNTNNNNTCACAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGGATCGATAGNGNCAT
TTAGGGGCTGGAGGATGCCTTAAGAGGTGCCGGATATATTTACAGCCTTG
ATGATTAGTAATGGCTTCACGGTACATTCTTTGGTGGTATTATTGGTATT
TTTTTTATGGTTTCTCTCTATATAATTTAGATGGACTTTTAACTTGTGAT
ACTCCTCCATAGTGCTGGTGTGGGTGTGCAGCATGACATCTGACCATGGA
GTTACTGATTTTTACGTTAAATCATTATCAGTGATTTAATATATAAATCT
TAATCAGTGAAGTTATATTTTGTTTAAATCACAAGGCTTCTGGCAAGGGT
CCTTGCCTTATTTTTGTTTTTGTCTTTTGTGACAGAGTCTCACTTTGTAC
TGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATA
CACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAGTCACAC
AACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTG
CCCCGAATTACACTTAAGACGACTCATCAGCTTAACGTTGGCTTGCCACG
CATTACTTGACTGTAGAACTCTCACTCTTACCGAACTTGGCCGTAATCTG
TCAACCAAAGCGAGAAACAAAGCTAACATCAGATGAATCGACCGATTGTT
AGGTAATCGTCACCTCCACAAAGAGCGACTCGTTGTATACCGTTGGCATG
CTAGCTTTATCTGTTCGGGCAATACGATGCCCATTGTACTTGGTGACTGG
CCTGATATTCCTGAGCACAAACGATTTATGGTATTTGGAGCTTCAGATCT
CCAACTCGGTCGTTTCGGTTATCTTTATAGAAAAACGTTCCCCGCTTTCT
AAATATGTTCCAAAAAAGTTTTCTGACCAATTTTTAAGCCAACTTTGCTA
ATTTTTACCGAATTATCCCACTCCCGTTTTTGGTCATTGAGCTGGTTTTT
ATAGTGCTTTGAAAAAAATCCCTCTTAAAAATCGTCTGTGGTATCTCGGA
TTCTCTCTACATTAAATAACATTTCTTTTTTTTATCTTCTGTGGCTGTAT
ACTTTTGAGTCTCATTAGACATTCTTCTTAGTAGTTCTCTGTTGTTCCTT
ATTCTCCTTATTTATTTATAGGTTTTCTAAGAAGTTCTCTTCTTATTCTC
CTTTATTTTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_i08.g1 MSMg01no323_i08.g1 CHROMAT_FILE:
MSMg01no323_i08.g1 PHD_FILE: MSMg01no323_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:10 2005
         (356 letters)



>mm_chr7_137188438_137189196
          Length = 759

 Score =  540 bits (279), Expect = e-158
 Identities = 308/321 (95%), Gaps = 7/321 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatatttacagccttgatgattagtaatggcttcacggtacattctttggtggtattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 519 atatatttacagccttgatgattagtaatggcttcacggtacattctttggtgatatcat 460

                                                                       
Query: 61  tggtattttttttatggtttctctctatataatttagatggacttttaacttgtgatact 120
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tggta--ttttttatggtttctctctatataatttagatggacttttaacttgtgatact 402

                                                                       
Query: 121 cctccatagtgctggtgtgggtgtgcagcatgacatctgaccatggagttactgattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cctccatagtgctggtgtgggtgtgcagcatgacatctgaccatggagttactgattttt 342

                                                                       
Query: 181 acgttaaatcattatcagtgatttaatatataaatcttaatcagtgaagttatattttgt 240
           || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 341 acattaaatcattatcagtgatttaatatataaatcttaatcagtaaagttatattttgt 282

                                                                       
Query: 241 ttaaatcacaaggcttctggcaagggtccttgccttatttttgtttttgtctttt----- 295
           |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||     
Sbjct: 281 ttaaatcacaaggcttctggcaagtgtccttgccctatttttgtttttgtcttttttttt 222

                                
Query: 296 gtgacagagtctcactttgta 316
           |||||||||||||||||||||
Sbjct: 221 gtgacagagtctcactttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 759
Length adjustment: 9
Effective length of query: 347
Effective length of database: 750
Effective search space:   260250
Effective search space used:   260250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)