Query= MSMg01no323_k23.b1 MSMg01no323_k23.b1 CHROMAT_FILE:
MSMg01no323_k23.b1 PHD_FILE: MSMg01no323_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:31 2005
(721 letters)
>mm_chr7_96761543_96762663
Length = 1121
Score = 1353 bits (700), Expect = 0.0
Identities = 716/722 (99%), Gaps = 3/722 (0%)
Strand = Plus / Minus
Query: 1 gaagtgcagaggtgaaaggcagccatgtctgctttctagattctgttttcttaactctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 gaagtgcagaggtgaaaggcagccatgtctgctttctagattctgttttcttaactctag 1011
Query: 61 ctgctagctcaacccagaactaaaataccaaacaaccaaacaattctctattctcataac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 ctgctagctcaacccagaactaaaataccaaacaaccaaacaattctctattctcataac 951
Query: 121 aaatttccccttttatcacaagctaattaaagcttgcctctgtatgtgcagttttagata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 aaatttccccttttatcacaagctaattaaagcttgcctctgtatgtgcagttttagata 891
Query: 181 gtcttaataaatactttaatcccagcactcgggaggcagaggcaggcggatttctgagtt 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 890 gtcttaataaatactttaatcccagcactcaggaggcagaggcaggcggatttctgagtt 831
Query: 241 cgaggccagcctggtctacaaagtgagttccaggacatccagggctatacagagaaaccc 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 830 cgaggccagcctggtctacaaagtgagctccaggacatccagggctatacagagaaaccc 771
Query: 301 tgtctcgaaaaaacaaaacaaaacaaaacaaaacaaaacaaaaaatacagatagtatgtg 360
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 770 tgtctcgaaaaaacaaaacaaaacaaaacaaaacaaaac--aaaatacagatagtatgtg 713
Query: 361 acagaatttaaacaaaactccaggctgttcatagtcaacacattgtattgactccctagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 acagaatttaaacaaaactccaggctgttcatagtcaacacattgtattgactccctagg 653
Query: 421 caaataattgcttagcttatagatagtttactaatcctggataagtgtctgagaaccatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 caaataattgcttagcttatagatagtttactaatcctggataagtgtctgagaaccatg 593
Query: 481 ctactcatcagttatcagcaattcactccaatggtaaagaaaagatctcgtgggagatca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ctactcatcagttatcagcaattcactccaatggtaaagaaaagatctcgtgggagatca 533
Query: 541 tttgagatgtaaacgaatggaatgattaataaaaaagaaatcaagaaatgg-aaaaaaaa 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 532 tttgagatgtaaacgaatggaatgattaataaaaaagaaatcaagaaatggaaaaaaaaa 473
Query: 600 agagaaaaaggcaacaatggacattcaagtttagagttctatggaggtacacaaaaaagt 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agagaaaaaagcaacaatggacattcaagtttagagttctatggaggtacacaaaaaagt 413
Query: 660 aaaagtatatagtttccttttttattctagtttacaatttactttaagcctgttttgcta 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaaagtatatagtttccttttttattctagtttacaatttactttaagcctgttttgcta 353
Query: 720 ag 721
||
Sbjct: 352 ag 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no323_k23.g1 MSMg01no323_k23.g1 CHROMAT_FILE:
MSMg01no323_k23.g1 PHD_FILE: MSMg01no323_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:31 2005
(666 letters)
>mm_chr7_96586019_96587084
Length = 1066
Score = 1232 bits (637), Expect = 0.0
Identities = 658/665 (98%)
Strand = Plus / Plus
Query: 2 gagccaggggcaaggaaggagagcaggccaaagagacacttgtttgtctatggctgtcca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gagccaggggcaaggaaggagagcaggccaaagagacacttgtttgtctatggctgtcca 261
Query: 62 gtggagaaataaaaggcatggctcgaaatgaaccaccaggtgtcactgtcgtcctcaatt 121
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 262 gtggagaaatgaaaggcatggctctaaatgaaccaccaggtgtcactgtcgtcctcaatt 321
Query: 122 aacaaagctgaactgggtaagggctatagaaacaactcaaaggtctacaaatgaagatac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aacaaagctgaactgggtaagggctatagaaacaactcaaaggtctacaaatgaagatac 381
Query: 182 tggggcaaaatctacttggtctcagcaggatcatgtggcaatttagcggtagggcaatag 241
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 382 tggggcaaaatctacttggtctcagcaggatcatgtagcaatttagcggtagggcaatag 441
Query: 242 taggaatccatgttccctaacttttgagccttgatggccactgtcccttgttgttcccag 301
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 442 taggaatccatgttccctaacttttgagccatgatggccactgtcccttgttgttcccag 501
Query: 302 ggcaggctacactttaacatatagatgagctatgggtttccctggtcactcaatgcaacc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggcaggctacactttaacatatagatgagctatgggtttccctggtcactcaatgcaacc 561
Query: 362 agcaacagaagagagagaaaatgagagagagaaaaatggcaaaagcctggagttcatttt 421
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 562 agcaacagaagagagagaaaatgagagagagaaaaatggcaaaagcccggagttcatttt 621
Query: 422 cacatgtgccgtcttcaaagggctgggtgtagatgctgctgccacaatgggagagcatgg 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 622 cacatgtgccgtcttcaaagggctgggtgtagatgctgctgccacaatgggagagcgtgg 681
Query: 482 ccctcaaggcctccatctgggacatggcttcaatagctgaatagagaggtatcaggtgat 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 682 ccctcaaggcctccatctgggacatggcttcaatagctgaatagagaggtatcaggtggt 741
Query: 542 gcatttcatcccttttatggcctaaacagagcccagttcccaaggaatataagagaccag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gcatttcatcccttttatggcctaaacagagcccagttcccaaggaatataagagaccag 801
Query: 602 tggctcaacaaagaattggctgaaacctaagtaggaaccagatgcaaaaaagaaaacatt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tggctcaacaaagaattggctgaaacctaagtaggaaccagatgcaaaaaagaaaacatt 861
Query: 662 ggctg 666
|||||
Sbjct: 862 ggctg 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
