Query= MSMg01no323_l13.b1 MSMg01no323_l13.b1 CHROMAT_FILE:
MSMg01no323_l13.b1 PHD_FILE: MSMg01no323_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:36 2005
(621 letters)
>mm_chr7_35148515_35149535
Length = 1021
Score = 1106 bits (572), Expect = 0.0
Identities = 609/624 (97%), Gaps = 6/624 (0%)
Strand = Plus / Plus
Query: 1 ctgaaactgtaagcaagcccaaatgtttccctttataagagttgctatggtcatggtgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaaactgtaagcaagcccaaatgtttccctttataagagttgctatggtcatggtgtc 260
Query: 61 tcttcataacaataaaatcccaactaagacatagggtttcaatatgtagtcctcgctgtt 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcataacaataaaaccccaactaagacatagggtttcaatatgtagtcctcgctgtt 320
Query: 121 ctggaactcacagagatctgcctgcttctatctacaggctgctaagattaaaggcataag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggaactcacagagatctgcctgcttctatctacaggctgctaagattaaaggcataag 380
Query: 181 ctaccacactcagcaaaatttgcattttttacagaaaatctggtaattataaggaaaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ctaccacactcagcaaaatttgcattttttacagaaaatctggtaattataaggaaaagt 440
Query: 241 cccatttcataattcagaaaattaaggcttattttttattaaaagatttatttattatat 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 cccatttcataattcagaaaattaaggcttattttttaaaaaaagatttatttattatat 500
Query: 301 gtatgtgagtacactgttgctatcttctgatacaccagaacaggacatcggctcttattt 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 gtatgtgagtacactgttgctatcttctgatacaccagaagaggacatcggctcttattt 560
Query: 361 tattattgatggttgctgggaattgaactcaggacctctgaaagagcagtcagtgatctt 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatt---gatggttgctgggaattgaactcaggacctctgaaagagcagtcagtgatctt 617
Query: 421 aaccactgaggcatctctccagcccccaggcttatttttttttttt---aagtaaagagc 477
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 618 aaccactgaggcatctctccagcccccaggcttttttttttttttttttaagtaaagagc 677
Query: 478 aaatatacattcatattagcctagaaaagtctttaaaaaaaaaagtaccaaaatgtaagc 537
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 678 aaatatacatttatattagcctagaaaagtctttaaaaaaaaaagtaacaaaatgtaagc 737
Query: 538 aagactttggttttgtttcattccttatgcttctatttcctagtaatttatagaaaatct 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aagactttggttttgtttcattccttatgcttctatttcctagtaatttatagaaaatct 797
Query: 598 ttaaaatgtttaaaacaattacac 621
||||| ||||||||||||||||||
Sbjct: 798 ttaaagtgtttaaaacaattacac 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_l13.g1 MSMg01no323_l13.g1 CHROMAT_FILE:
MSMg01no323_l13.g1 PHD_FILE: MSMg01no323_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:36 2005
(642 letters)
>mm_chr7_35319739_35320776
Length = 1038
Score = 1064 bits (550), Expect = 0.0
Identities = 586/604 (97%), Gaps = 12/604 (1%)
Strand = Plus / Minus
Query: 1 catggtgatggagagctaacgcgccttctcggcctaggcagccctcggcagcagcagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 catggtgatggagagctaacgcgccttctcggcctaggcagccctcggcagcagcagcta 737
Query: 61 actctagggagcaactgagcagttctttgctgtgaattctcatctggcctctctagagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 actctagggagcaactgagcagttctttgctgtgaattctcatctggcctctctagagag 677
Query: 121 aagtaagagtgccagggctagaggtgcttgggcccttcatcgggcaggcttgcctctgct 180
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 676 aagtaagagcgccagggctagaggtgcgtgggcccttcatcgggcaggcttgcctctgct 617
Query: 181 cccattactcactccataacacacagggtttcaaatataaggggcagagatctaaagagc 240
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 616 cccattactcactccataacacacagggtttgaaatacaaggggcagagatctaaagagc 557
Query: 241 tgccaaggaggatactggtccaaggaagccacttg----ttttgccactctgctggccca 296
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 556 tgccaaggaggatactggtccaaggaagccacttggcaa----gccactctgctggccca 501
Query: 297 gactccaccctccaataggaactactaggctgaactttcccaggagttattctctacaca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gactccaccctccaataggaactactaggctgaactttcccaggagttattctctacaca 441
Query: 357 cacgtagctcaagatgaaccacaactgcttgcagcaagcgttaagtgagaggtgggactt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cacgtagctcaagatgaaccacaactgcttgcagcaagcgttaagtgagaggtgggactt 381
Query: 417 tcaagaggtgcctgggttccaagggctctgtagttgggagtgggttgatacagttatgtg 476
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 380 tcaagaggtgcctgggttccaagggctctgttgttgggagtgggttgatac----atgtg 325
Query: 477 ggagtgagttaatcgtgagaatcctccccctgctcagaccctctctctgacctatgctca 536
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagtgagttaatcgtgagaatcttccccctgctcagaccctctctctgacctatgctca 265
Query: 537 cttgccttccatcccgctatgacgtagcaagggatcccttggcagatgtcaaactcatgc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttgccttccatcccgctatgacgtagcaagggatcccttggcagatgtcaaactcatgc 205
Query: 597 ttac 600
||||
Sbjct: 204 ttac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1038
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1028
Effective search space: 649696
Effective search space used: 649696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
