BAC Information

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BAC

Clone NameMSMg01-324E14
Chromosome7 (Build37)
Map Location 107,960,237 - 108,120,553
singlet/doubletdoublet
Overlap geneB930006L02Rik, Tnfrsf19l, Arhgef17, P2ry6
Upstream geneNeu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1, AU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, LOC100041204
Downstream geneP2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324E14.T7 (MSMg01no324_e14.b1)MSMg01-324E14.TJ (MSMg01no324_e14.g1)
ACCAG442480AG442481
length732736
length of high quality
(start - end)		697 (36 - 732)657 (77 - 733)
definitionCHROMAT_FILE: MSMg01no324_e14.b1 PHD_FILE: MSMg01no324_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:34 2005CHROMAT_FILE: MSMg01no324_e14.g1 PHD_FILE: MSMg01no324_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,960,237 - 107,960,927)(108,120,006 - 108,120,553)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGAA
ATACCTATTTAAAAGTAGATTAGATTGGTTACCAGTGAGGACTAGAGGGT
TGGGAGGAACAGTGGTTACAAAGTTTCTATTTGAGAATGGTAAGTTTTAG
AGACACAGAGGACAGTTGTATAACACTAGGAAAGTAATGAAGTGTATTGA
ATTACCCAAATAATATGCTAGCTATTTTTCTGATCACTGTACTTCAGAGA
AGTAATTTATTTTAGTTCATGGTTTCAAGGAATGTATTCCATCATGTCCG
TGAGGGCTGTGAGGGCAGAGCTTGCCCTTGGTCACATTAGACAGCAGACA
GGAAACCAAGATGGGCCGTGAAGCAGAGCCAGGTTATAAGCTGTGCCCCC
GGTGGCCTGTGTCTCTTAGATTCCACAGCTTCCCAGAACAGTGCTAACAG
ATGGCGGGGAGCAGGTGCCAAGTGCATAGCCAACGGAGGGACAGTGAGCA
TTATAGTGACAACAATGGTTAAAATGACAAATTTTATATATAGCACATTA
GAATTTCAACAATAAAACAGTGTGTAGGGCTGGCTGGGTGGTTCAGTGGG
TTAAGGCCCTTGCCAGACAAACCTTTTGACCTGAGTTTGATGCCTGGATT
CCACATTCAGCAGAAAGGAGAGACTCAGCTCCACTAAGCTGTTCTCTGAC
CTTCACACATGTGCAGTGATATGAGCGTCTAT

CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTAACCTGGTCTACATAGTG
AGCTCTGGAATAACAAGCACTACATAGAAAGATCCTGTCTCAAAGGAAAG
GCACAAAAGTAAGGACACATGTAAATTTAGCTGTGAGACAGGGTAATGGA
ACTTTTCCAGAGCCGCGGGTGACCTGGCCTGTGATTGCCCCCATTTTCCC
TTATACAAAGATTTTTCATTCAAACCCAAAAGGAAGAAAACAGTCTTTAA
AATCCCCCATTTTTGTTTGCTTTTGGTTTTCAGGATATGGGGACTTGAGC
CAGGATCTTGCATAGCTTAGGCTGACCTGGCCTATTATTCTTTAGTAGAG
AATCATTAGCCTTGACCTCCTGATCCTCCTGCCTCTACCACACCAATGCT
GAAATTACAGAGTGCTGGGATTACAGATATGGACCACTGTGACCTGCAAG
ATCTGCCCCCCCTTTTGTTTTCATAGTCTCAGGTAGCCCAGGTTGGCTAT
GCCTTCTCCGTGTAGTTAGGACAATCTGGAACTCCTCCACCCCCTGAGAG
CAGGGATCCATCACGGAGCACCACGCTCAGGCTATGCAGTTCTGGTGACT
GAACCCTGGGCTCTACCAGTTGAGCCTCAGACTCAGCTCTAAGAGGAAAT
ACCCCCCAGAGAAACTGTGAGGTGTAAGAACCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_e14.b1 MSMg01no324_e14.b1 CHROMAT_FILE:
MSMg01no324_e14.b1 PHD_FILE: MSMg01no324_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:34 2005
         (697 letters)



>mm_chr7_107960033_107961129
          Length = 1097

 Score = 1305 bits (675), Expect = 0.0
 Identities = 687/691 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagaaatacctatttaaaagtagattagattggttaccagtgaggactagaggg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagaaataactatttaaaagtagattagattggttaccagtgaggactagaggg 264

                                                                       
Query: 65  ttgggaggaacagtggttacaaagtttctatttgagaatggtaagttttagagacacaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgggaggaacagtggttacaaagtttctatttgagaatggtaagttttagagacacaga 324

                                                                       
Query: 125 ggacagttgtataacactaggaaagtaatgaagtgtattgaattacccaaataatatgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggacagttgtataacactaggaaagtaatgaagtgtattgaattacccaaataatatgct 384

                                                                       
Query: 185 agctatttttctgatcactgtacttcagagaagtaatttattttagttcatggtttcaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctatttttctgatcactgtacttcagagaagtaatttattttagttcatggtttcaag 444

                                                                       
Query: 245 gaatgtattccatcatgtccgtgagggctgtgagggcagagcttgcccttggtcacatta 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 gaatgtattccatcatgtccgtgagggctgtgagggcagagcttgcccttggtcacatca 504

                                                                       
Query: 305 gacagcagacaggaaaccaagatgggccgtgaagcagagccaggttataagctgtgcccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacagcagacaggaaaccaagatgggccgtgaagcagagccaggttataagctgtgcccc 564

                                                                       
Query: 365 cggtggcctgtgtctcttagattccacagcttcccagaacagtgctaacagatggcgggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cggtggcctgtgtctcttagattccacagcttcccagaacagtgctaacagatggcgggg 624

                                                                       
Query: 425 agcaggtgccaagtgcatagccaacggagggacagtgagcattatagtgacaacaatggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 agcaggtgccaagtgcatagccaacggagggacagtgagcattatagtgacaacaatagt 684

                                                                       
Query: 485 taaaatgacaaattttatatatagcacattagaatttcaacaataaaacagtgtgtaggg 544
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 685 taaaatgacaaattttatatatagcacattagaatttcaacaacaaaacagtgtgtaggg 744

                                                                       
Query: 545 ctggctgggtggttcagtgggttaaggcccttgccagacaaaccttttgacctgagtttg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctggctgggtggttcagtgggttaaggcccttgccagacaaaccttttgacctgagtttg 804

                                                                       
Query: 605 atgcctggattccacattcagcagaaaggagagactcagctccactaagctgttctctga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atgcctggattccacattcagcagaaaggagagactcagctccactaagctgttctctga 864

                                          
Query: 665 ccttcacacatgtgcagtgatatgagcgtct 695
           |||||||||||||||||||||||||||||||
Sbjct: 865 ccttcacacatgtgcagtgatatgagcgtct 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no324_e14.g1 MSMg01no324_e14.g1 CHROMAT_FILE:
MSMg01no324_e14.g1 PHD_FILE: MSMg01no324_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:34 2005
         (657 letters)



>mm_chr7_108120006_108121062
          Length = 1057

 Score = 1006 bits (520), Expect = 0.0
 Identities = 541/548 (98%), Gaps = 1/548 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggctaacctggtctacatagtgagctctggaataacaagcactacatagaaagatcct 60
           ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 548 aaggccaacctggtctacatagtgagctctgaaataacaagcactacatagaaagatcct 489

                                                                       
Query: 61  gtctcaaaggaaaggcacaaaagtaaggacacatgtaaatttagctgtgagacagggtaa 120
           |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 488 gtctcaaatgaaaggcacaaaagtaaggacacatgtgaatttagctgtgagacagggtaa 429

                                                                       
Query: 121 tggaacttttccagagccgcgggtgacctggcctgtgattgcccccattttcccttatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tggaacttttccagagccgcgggtgacctggcctgtgattgcccccattttcccttatac 369

                                                                       
Query: 181 aaagatttttcattcaaacccaaaaggaagaaaacagtctttaaaatcccccatttttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 368 aaagatttttcattcaaacccaaaaggaagaaaacagtctttaaaatcccctatttttgt 309

                                                                       
Query: 241 ttgcttttggttttcaggatatggggacttgagccaggatcttgcatagcttaggctgac 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 308 ttgcttttggttttcaggatatgggggcttgagccaggatcttgcatagcttaggctgac 249

                                                                       
Query: 301 ctggcctattattctttagtagagaatcattagccttgacctcctgatcctcctgcctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctggcctattattctttagtagagaatcattagccttgacctcctgatcctcctgcctct 189

                                                                       
Query: 361 accacaccaatgctgaaattacagagtgctgggattacagatatggaccactgtgacctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 accacaccaatgctgaaattacagagtgctgggattacagatatggaccactgtgacctg 129

                                                                       
Query: 421 caagatctgccccccc-ttttgttttcatagtctcaggtagcccaggttggctatgcctt 479
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 caagatctgccccccccttttgttttcatagtctcaggtagcccaggttggctatgcctt 69

                                                                       
Query: 480 ctccgtgtagttaggacaatctggaactcctccaccccctgagagcagggatccatcacg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  ctccgtgtagttaggacaatctggaactcctccaccccctgagagcagggatccatcacg 9

                   
Query: 540 gagcacca 547
           ||||||||
Sbjct: 8   gagcacca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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