BAC Information

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BAC

Clone NameMSMg01-324N08
Chromosome7 (Build37)
Map Location 128,288,114 - 128,288,587
singlet/doubletsinglet
Overlap geneOtoa
Upstream geneZp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6
Downstream geneLOC668556, Hs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324N08.T7 (MSMg01no324_n08.b1)MSMg01-324N08.TJ (MSMg01no324_n08.g1)
ACCAG442877AG442878
length742758
length of high quality
(start - end)
402 (39 - 440)471 (81 - 551)
definitionCHROMAT_FILE: MSMg01no324_n08.b1 PHD_FILE: MSMg01no324_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:14 2005CHROMAT_FILE: MSMg01no324_n08.g1 PHD_FILE: MSMg01no324_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAAACGACTCCTATATTTCGTACTGCGCGGATTCTTTGTTCTT
TCTGACACCCATTTTTTATGGGGTTATTTGATTTTCTGAATCCACCTTCT
TGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAG
GTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGT
GTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAA
TTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCC
CCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTT
CAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCT
TACCACCAGGAGATAAGTATGGATCAATTCGCATTCTTCTACACGATAAC
AACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTG
GATGGCTTTAGTTCCCTTGTCGAGGATCAAGTGACCATAGGTGTGTGGGT
TCATTTCTGGGTCCTCAATTCTATTTCATTGGTCTACTTGTCTGTCTCTA
TACCAGTACCATGCAGCTTTTATCAAAATTGTTTCTGTAATAAAGCTTTA
CGTCAAGCATGTAGAATCCACCTTAGGTTCTTTTTTCCCTTGAGAAAAGT
TCTTGCCCTCCTTAAGTTTTATTGTTTTCCCCAATTTATTTG
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCCAGGTCCAACTTGGGG
AAACAAAGGGTTTATCGGACTTACTTACAGAGTACGCATGGGGGGGCCTT
CCCAGAGCATAAGTGACCCTAAAACAACTATGCCACAATGAAGTCTCACT
CTGAATAAGCAAGTAAGCAGCAACAGCCAGCCGTCACTGTCCCCGTCACT
ATCAATGTCAGTTCTGATTAATCCCGCCCACCTCATGCCAGTAAGAGTCA
ATATTTACCAGGCACTCAGTGCAGATTATAAAAATGGTGATACACCTGAT
AGTCCTTAAGGAAAAACACTTTCTGATAATTCCTTTCATGCCACGCCCTT
TGGAAACTGGGGAGGATTAAACTCTCACAATGACCACTGCAGCCCAGAGT
TCACATGGCCCCACTTTAGAGGGTGAAACCTGAGGTACAGCAAGGCGTGG
TGGCTCCCACCTGTAATCCCAGCCCTAGAGAGGCTGCTGCACAAGGAATA
AGAATCGGAGGTTGCCTAGACTACATAGTGAGTTACAAGCCTCTGGGCTA
CAGAGAGAAACCCTGACTCTTAACAAAGAAAGGGGTAGGCAACCTGAAGA
CCTTAGGGGAGAGCCACACAGTCATTAAGAGACTTCAAGCCCTACCGACC
TGAACCTTGTATTTGCAAGGTTAGGTGAGCCTTTAAGATTAGCCAAATTA
AGGCTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_n08.g1 MSMg01no324_n08.g1 CHROMAT_FILE:
MSMg01no324_n08.g1 PHD_FILE: MSMg01no324_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:15 2005
         (471 letters)



>mm_chr7_128287871_128288741
          Length = 871

 Score =  857 bits (443), Expect = 0.0
 Identities = 466/475 (98%), Gaps = 5/475 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacccaggtccaacttggggaaacaaagggtttatcggacttacttacagagtacgca-t 59
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct: 717 cacccaggtccaacttggggaaacaaagggtttatcgggcttacttacagagtatg-agt 659

                                                                       
Query: 60  ---gggggggccttcccagagcataagtgaccctaaaacaactatgccacaatgaagtct 116
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ggggggggggccttcccagagcataagtgaccctaaaacaactatgccacaatgaagtct 599

                                                                       
Query: 117 cactctgaataagcaagtaagcagcaacagccagccgtcactgtccccgtcactatcaat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cactctgaataagcaagtaagcagcaacagccagccgtcactgtccccgtcactatcaat 539

                                                                       
Query: 177 gtcagttctgattaatcccgcccacctcatgccagtaagagtcaatatttaccaggcact 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtcagttctgattaatcccgcccacctcatgccagtaagagtcaatatttaccaggcact 479

                                                                       
Query: 237 cagtgcagattataaaaatggtgatacacctgatagtccttaaggaaaaacactttctga 296
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 478 cagtgcagattataaaaatggtgatacacctggtagtccttaaggaaaaacactttctga 419

                                                                       
Query: 297 taattcctttcatgccacgccctttggaaactggggaggattaaactctcacaatgacca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 taattcctttcatgccacgccctttggaaactggggaggattaaactctcacaatgacca 359

                                                                       
Query: 357 ctgcagcccagagttcacatggccccactttagagggtgaaacctgaggtacagcaaggc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctgcagcccagagttcacatggccccactttagagggtgaaacctgaggtacagcaaggc 299

                                                                  
Query: 417 gtggtggctcccacctgtaatcccagccctagagaggctgctgcacaaggaataa 471
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 298 gtggtggctcccacctgtaatcccagccctagagaggctgctgcacgaggaataa 244


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)