BAC Information

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BAC

Clone NameMSMg01-325A06
Chromosome7 (Build37)
Map Location 125,274,094 - 125,274,465
singlet/doubletsinglet
Overlap genenone
Upstream geneXylt1, LOC669758, Rps15a, Arl6ip1
Downstream gene2610207I05Rik, LOC100043339, Syt17, LOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325A06.T7 (MSMg01no325_a06.b1)MSMg01-325A06.TJ (MSMg01no325_a06.g1)
ACCAG443009AG443010
length739928
length of high quality
(start - end)
371 (48 - 418)---
definitionCHROMAT_FILE: MSMg01no325_a06.b1 PHD_FILE: MSMg01no325_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:28 2005CHROMAT_FILE: MSMg01no325_a06.g1 PHD_FILE: MSMg01no325_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAAAACGCGGAA
TTCCCTCCTTCTCTTCCCTATTGAGAACAAAAGGACCCAAACAGCTGCTA
CCAAGCAATGAGGTGCCCATCTTGGTGGTACCAGGAGCAGTCACTTTGCT
AAGAGAGGGCAGAGTAATAAGCTTTTCCTTGGCAACTTGGCTACTGCCCC
AGAAAGCTTAGTTTAGTCGGTGTTCCCAAAGTAAAATTTAAGTTTAGGCC
AGTCCCAGGTCCCAATCCAGCTCTCACTAACCTTCCAAATGGGTCAGAGG
TTACAAACACCTCTTTTTCTACCACAAAGTGACCTTTGAAATGTGTCAGA
AGATGAAGCTCGTAACACCGATCTTCCTCAGAACTTTGGCACTGCAAATG
AAGAAGATCTTTGCAAATACTCCCCCTCTTTCAGAGCTTTCACTCACAAT
TAAGGCTCTGCAGTTTTGTTTTAAATATTGCTAAAATTAAGCGTCATGCA
TTTTCTGTGTAATCCTGGCTGTCCTGAAACTTGCTTTATAGACCAGATTC
GCCTAGAAATTCCCCCTATCCTTGCCTCCCCTGGGATTGAAGGTGTCGAT
TCTTACCTAAGAACTTTCCTACTGAAATAATCGAATCGCTGTTCAAAAGG
GAGCAAAAACATTTTTTAAGAAATTTTTTTTAATTTGGGAGAGAAAAAAT
TGAAAATAAAAAAAGCCCCCAATACTTATTTCCTCAAAC
TTTGTGATGTGGGCCGTGGGCTTTGGNACCAACAACCTCTTCTCCCTACG
AGAACAACCACCAAACTATCCCCCACGAGAAACACACCATAAAAAAAAAA
TTCCCATTATGTCTCAATGTAATCTACACCCCCTCTTTTGAAGTGTAACG
CGCGGGAGTAGCCGCGGCCTGCCTGGCCGCGGCCGACGGCGGTTGTTTCT
TTTGTGTTTTAATAAAAAGGTATATAATATTCCTATCTAGTTCCACAATA
AAGTCCCTTCATGCCTGTTGTCCACAGTTCCCATAAAACACCCCAAATGG
ACCCCGCGGGCAGATGTGGTCACGTGCAGTGAGCGGGAGCAAGAGCGGTC
GCGGTCTGGGCGCTCCTACAATTTCCAAATAGGAAGAGAAGGGAAAGTGA
TGGAGACCCGTGTGAGGGGTGGCAATCTCGGGAGACATGGAACATAGGTG
AGAGATGATGGACATTCGGAAGCGCGGGACGAACTAAACTCGACATGATT
AGGGGAATTCTGTGCGAACTAACAAAACGAACTGCAAATACGCACTCATT
GTGAATCAACACAAACCACTAAAGATAATCTGCTGCCTCCCTTGTATCGT
ATTCGATACCCGCCTCACAGCCTAGCCAAAAACACGGAAGGCTTTGATCA
ACCGGTTTTGCCACCCTTTGTCCCCACAGATTTCGACTCATCCCCACCAC
CCTCTAATAATCACCTAACACTCAATACCCTTTCGCGGCACAGGGTCCCA
CATTCCGGGGCGGGTTTAAGAGGATCCCAGGGGGGTCCGGGGGCACCCGG
GTCCATTGGGGGGAATAAGGCGTGGGCTTAGNCNTTATTTGTGAAAGTCC
TCTTTCCAAACCACCCCATATTGCTCCCCATTAACAGGGGTGTCTTCAGT
GCGTTGGGCGGGTCAAAAAAAAATAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_a06.b1 MSMg01no325_a06.b1 CHROMAT_FILE:
MSMg01no325_a06.b1 PHD_FILE: MSMg01no325_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:28 2005
         (371 letters)



>mm_chr7_125273894_125274665
          Length = 772

 Score =  658 bits (340), Expect = 0.0
 Identities = 364/372 (97%), Gaps = 1/372 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattccctccttctcttccctattgagaacaaaaggacccaaacagctgctaccaagca 60
           |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattccctccttctcctcagtattgagaacaaaaggacccaaacagctgctaccaagca 260

                                                                       
Query: 61  atgaggtgcccatcttggtggtaccaggagcagtcactttgctaagagagggcagagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaggtgcccatcttggtggtaccaggagcagtcactttgctaagagagggcagagtaa 320

                                                                       
Query: 121 taagcttttccttggcaacttggctactgccccagaaagcttagtttagtcggtgttccc 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtttttccttggcaacttggctactgccccagaaagcttagtttagtcggtgttccc 380

                                                                       
Query: 181 aaagtaaaatttaagtttaggccagtcccaggtcccaatccagctctcactaaccttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtaaaatttaagtttaggccagtcccaggtcccaatccagctctcactaaccttcca 440

                                                                       
Query: 241 aatgggtcagaggttacaaacacctctttttctaccacaaagtgaccttt-gaaatgtgt 299
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 aatggctcagaggttacaaacacctctttttctaccacaaagtgaccttttgaaatgtgt 500

                                                                       
Query: 300 cagaagatgaagctcgtaacaccgatcttcctcagaactttggcactgcaaatgaagaag 359
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaagatgaagctcgtaacacaaatcttcctcagaactttggcactgcaaatgaagaag 560

                       
Query: 360 atctttgcaaat 371
           ||||||||||||
Sbjct: 561 atctttgcaaat 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space:   276206
Effective search space used:   276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)