BAC Information

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BAC

Clone NameMSMg01-325G18
Chromosome7 (Build37)
Map Location 3,939,525 - 3,940,206
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841
Downstream geneLair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325G18.T7 (MSMg01no325_g18.b1)MSMg01-325G18.TJ (MSMg01no325_g18.g1)
ACCAG443315AG443316
length731733
length of high quality
(start - end)
684 (48 - 731)589 (77 - 665)
definitionCHROMAT_FILE: MSMg01no325_g18.b1 PHD_FILE: MSMg01no325_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:55 2005CHROMAT_FILE: MSMg01no325_g18.g1 PHD_FILE: MSMg01no325_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGG
AATTCTGATATTATTACCACTTTATAGTCAATACTCAGATTAATAGATAG
GACAGACTCCCCAATTCTTTGATTTTTTTCTTATAAAAAATTGTCTTGAA
ACCCCCTTCCAACCCAAAAAATTAAGCAATGTATATAGGTATGTTTCTGT
GTAGGATAATCTACACTTTAGTTTAGATACCTGCTAAGGTCGGAAGTGTC
ATATTCTCCGGAGTAGAAGTTAGAGACAGTTGTAAGAAACTTGATCCTGA
GGAAAAAGTCTACCATCCTGTGCAAGAGGAGCACACATATTTATCTGCTG
ATCTATCTCTTCACCTCCAATCATTGATATTCATAGGCTGTATTACATAC
ATACATCCATAGTCAGGAGACACACAACGAGATAAGGCCTTATATGGGCA
TTTGAATCCTCAAAAGTCCAAGCCCAGTAACATACCTCCACGAACAAGGC
CACATCTATTTTTTCTTCAATAATGTTTTATTCACTTTACATACTGATCA
CAGACCCCCTCCCTCCTCTCCTTCCAGTCCTGCCCTTGCAAACACCTCCA
CTCACTATTCTTGCCTTTTCTCTTCAGAGAAGAAGAAGCACTCCTCAGGA
CCACCCCACCCTGGGACATCTACTTCCAGCAGAACTAGGCACATTCTCTC
CCACTGAGAGCAGACNAGGCAACCCAGACAG
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATTAATGGTCCTTTTGCCAAAG
AATTGCTATGGGCACATTGAGTAAGAATAACTAAAATTTGATTACACTGA
TAACAATTGATTACTGCAGCTTTCTCTACTTTTTGCAAAGCTATTCATAC
CTCACCAGTTATTTTGCATCCCCCTTGAGAACATCCAACAAAGGTTTAAG
TCCTCCTGTGATGAGCTTAAGGTGAGGTCTTATCCAATTAACATCTCCTG
GAAGCTTTGAAAATAATTTGAAGTAAGCAAGTCATCTTTTCTTTCTTGAA
TTTTCTGTGCCATACTTTTTCTAGGATATAACTGAGACCCGAAATATTGA
AAAAGATATGGCCTCTGAATCCTTTCTGGAGCAACAACTACTCCAATTTT
TTTTTTTTTTTAATGGTTTTAGAGCTTTATTGTACAAAGGCAGGGGGAAG
GAGAGAAGGTAGACAGAGACCGGCCATCGCCATGTGGCAAGAGGGGGGGA
AGGGAGAGAGAAGGAGGGCTAGAGAGTAGTTGTATAAGAGCAAAGATCTG
TAGTAAAATGCCATCAGAGGGATCAGCTAATAAGATACTCTCCCTCTAAT
AAACAATATACACGGGCTGGTGAGATGGCTCAGTGTTTAAGAGCACCCGA
CTGCTCTTCCGAAGGTCCGTAGTTCAAGTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_g18.b1 MSMg01no325_g18.b1 CHROMAT_FILE:
MSMg01no325_g18.b1 PHD_FILE: MSMg01no325_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:55 2005
         (684 letters)



>mm_chr7_3939323_3940406
          Length = 1084

 Score = 1251 bits (647), Expect = 0.0
 Identities = 673/682 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctgatattattaccactttatagtcaatactcagattaatagataggacagactc 62
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctgatattactactactttatagtcaatactcagattaatagataggacagactc 262

                                                                       
Query: 63  cccaattctttgatttttttcttataaaaaattgtcttgaaacccccttccaacccaaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cccaattctttgatttttttcttataaaaaattgtcttgaaacccccttccaacccaaaa 322

                                                                       
Query: 123 aattaagcaatgtatataggtatgtttctgtgtaggataatctacactttagtttagata 182
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aattaagcaatgtatataggtgtgtttctgtgtaggataatctacactttagtttagata 382

                                                                       
Query: 183 cctgctaaggtcggaagtgtcatattctccggagtagaagttagagacagttgtaagaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cctgctaaggtcggaagtgtcatattctccggagtagaagttagagacagttgtaagaaa 442

                                                                       
Query: 243 cttgatcctgaggaaaaagtctaccatcctgtgcaagaggagcacacatatttatctgct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 443 cttgatcctgaggaaaaagtctaccatcctgtgcaagaggagcacacatatttatctgcg 502

                                                                       
Query: 303 gatctatctcttcacctccaatcattgatattcataggctgtattacatacatacatcca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gatctatctcttcacctccaatcattgatattcataggctgtattacatacatacatcca 562

                                                                       
Query: 363 tagtcaggagacacacaacgagataaggccttatatgggcatttgaatcctcaaaagtcc 422
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagtcaggagacagagaacgagataaggccttatatgggcatttgaatcctcaaaagtcc 622

                                                                       
Query: 423 aagcccagtaacatacctccacgaacaaggccacatctattttttcttcaataatgtttt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 623 aagcccagtaacatacctccacgaacaaggccacatctattttttcttcaataatttttt 682

                                                                       
Query: 483 attcactttacatactgatcacagaccccctccctcctctccttccagtcctgcccttgc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 attcactttacatactgatcacagaccccctccctcctctccttccagtcctgcccttgc 742

                                                                       
Query: 543 aaacacctccactcactattcttgccttttctcttcagagaagaagaagcactcctcagg 602
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 743 aaacacctccactcactattcttgccttttctcttcagagaagaggaagcactcctcagg 802

                                                                       
Query: 603 accaccccaccctgggacatctacttccagcagaactaggcacattctctcccactgaga 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 accaccccaccctgggacatctacttccagcagaactaggcacattctctcccactgaga 862

                                 
Query: 663 gcagacnaggcaacccagacag 684
           |||||| |||||||||||||||
Sbjct: 863 gcagacaaggcaacccagacag 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)