BAC Information

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BAC

Clone NameMSMg01-325K22
Chromosome7 (Build37)
Map Location 38,592,329 - 38,653,338
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043874, Zfp536, LOC100043453
Downstream geneEG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325K22.T7 (MSMg01no325_k22.b1)MSMg01-325K22.TJ (MSMg01no325_k22.g1)
ACCAG443506AG443507
length736727
length of high quality
(start - end)		378 (44 - 421)647 (76 - 722)
definitionCHROMAT_FILE: MSMg01no325_k22.b1 PHD_FILE: MSMg01no325_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:14 2005CHROMAT_FILE: MSMg01no325_k22.g1 PHD_FILE: MSMg01no325_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,592,329 - 38,592,702)(38,652,838 - 38,653,338)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATTTTTAAACCACTATGAGGCTGCCACCCCATTTTCTTCTGGCTCA
CCCGGTTTCTGATGGTAAGTACCCTTGGTTTGTTTTAATATGTGATATAC
CCCTTGGATTTTGTGTTGTTCTCAGTGGATGGAATGTAAGATGTCTACTT
GATTTATTTGTCTTGGTTTTTGTTTTGTTCTGACTTTTGTGGGTAGGTGC
ATTTAATGTCTGAAATTTTTGGATCTGAAGTTATTTATTTAGTTATTATA
TTTCGATATTGTATTAGTTAGTTAATATATTCAGATCTATAGTTATTTAT
TTAGTTATGTTATTTAGATATTGTATTTAGTTATTATATTATTTATATTA
TTTAGTTATTATATTTATATACGCATTNNNNNNNNNNNNNNNNNTNNNTN
NNNNNNNTNNNNNNNTTNTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTNTNTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTT
TTTTTNTTTTTTTNTTTTTTTTTTTTTTNNTTTTNTTTNTTTTTTTTTTT
TTTTTTNNNNNTTTTTTTTTTTTTTTTTTTTTTNTTNNTTTTTNTTTTTT
TTTTTTTTTTTTTNTTNTTTTTNTTTTTTTTTTTTN

NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGATGTAACTGCTAGTTGATT
GCTTTTTGGGGAATTTTTTGTGATTAAAGACCACTTCCCAGGGACATCAG
CACCTGCAGTTTGGAGATCATGGCCTCCCCAGAAGTTGTTGATGTTGATG
ATGATGACGACGATGACGATGCTATTTCATTTCTTTTCTTTGTCTTTCCC
CTCTTCCTTCCTCTTTCACCTTCTTTTTATTATCAATTCCATTAGATGAC
TTCTATAATCTTCCAAAATCAGCAGTCGAGGACCTGCAGGACTAATGTCT
TTTCCTTCAAATTTGAGCAAAAAGTAATTGAGACCAGAGCCTGGCAACGA
GACTGAAGGCTTTGCAGAGACCTGTGAACATGGCCCAGCCTATTCCTGAA
AGGCCAGGGGGGCTCCTGCCCGGTTTTCTGACATCAGTGCTGTCATTGGT
GCCATTGGTGGTCACTCTCTCCTGTGTGTATTGCAGAGGGCAGGTCCTCC
TCAAAACCTGAGGCACCAGCACTTTCTATGTTCAAAAACTGTTTCAGAAT
AAAGGCAGGGATGACATCTCTCTTTTGGAGAAGGGAAAGGGAGACTGTGT
GTGAAGCACACTGGGGGTGACAGGGAGGACAGAGGCCCTTCCCTCAGTAT
GCATTCTAGGGATAAGGCTGAGAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_k22.b1 MSMg01no325_k22.b1 CHROMAT_FILE:
MSMg01no325_k22.b1 PHD_FILE: MSMg01no325_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:14 2005
         (378 letters)



>mm_chr7_38592125_38592902
          Length = 778

 Score =  716 bits (370), Expect = 0.0
 Identities = 373/374 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatttttaaaccactatgaggctgccaccccattttcttctggctcacccggtt 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatttttaaaccattatgaggctgccaccccattttcttctggctcacccggtt 264

                                                                       
Query: 65  tctgatggtaagtacccttggtttgttttaatatgtgatataccccttggattttgtgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgatggtaagtacccttggtttgttttaatatgtgatataccccttggattttgtgtt 324

                                                                       
Query: 125 gttctcagtggatggaatgtaagatgtctacttgatttatttgtcttggtttttgttttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttctcagtggatggaatgtaagatgtctacttgatttatttgtcttggtttttgttttg 384

                                                                       
Query: 185 ttctgacttttgtgggtaggtgcatttaatgtctgaaatttttggatctgaagttattta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctgacttttgtgggtaggtgcatttaatgtctgaaatttttggatctgaagttattta 444

                                                                       
Query: 245 tttagttattatatttcgatattgtattagttagttaatatattcagatctatagttatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttagttattatatttcgatattgtattagttagttaatatattcagatctatagttatt 504

                                                                       
Query: 305 tatttagttatgttatttagatattgtatttagttattatattatttatattatttagtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatttagttatgttatttagatattgtatttagttattatattatttatattatttagtt 564

                         
Query: 365 attatatttatata 378
           ||||||||||||||
Sbjct: 565 attatatttatata 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_k22.g1 MSMg01no325_k22.g1 CHROMAT_FILE:
MSMg01no325_k22.g1 PHD_FILE: MSMg01no325_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:14 2005
         (647 letters)



>mm_chr7_38652292_38653338
          Length = 1047

 Score =  953 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Minus

                                                                        
Query: 147  ctatttcatttcttttctttgtctttcccctcttccttcctctttcaccttctttttatt 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 ctatttcatttcttttctttgtctttcccctcttccttcctctttcaccttctttttatt 988

                                                                        
Query: 207  atcaattccattagatgacttctataatcttccaaaatcagcagtcgaggacctgcagga 266
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 987  atcaattccattagatgacttctataatcttccaaaatcagcaatcgaggacctgcagga 928

                                                                        
Query: 267  ctaatgtcttttccttcaaatttgagcaaaaagtaattgagaccagagcctggcaacgag 326
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  ctaatgtcttttccttcaagtttgagcaaaaagtaattgagaccagagcctggcaacgag 868

                                                                        
Query: 327  actgaaggctttgcagagacctgtgaacatggcccagcctattcctgaaaggccaggggg 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867  actgaaggctttgcagagacctgtgaacatggcccagcctattcctgaaaggccaggggg 808

                                                                        
Query: 387  gctcctgcccggttttctgacatcagtgctgtcattggtgccattggtggtcactctctc 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807  gctcctgcccggttttctgacatcagtgctgtcattggtgccattggtggtcactctctc 748

                                                                        
Query: 447  ctgtgtgtattgcagagggcaggtcctcctcaaaacctgaggcaccagcactttctatgt 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747  ctgtgtgtattgcagagggcaggtcctcctcaaaacctgaggcaccagcactttctatgt 688

                                                                        
Query: 507  tcaaaaactgtttcagaataaaggcagggatgacatctctcttttggagaagggaaaggg 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  tcaaaaactgtttcagaataaaggcagggatgacatctctcttttggagaagggaaaggg 628

                                                                        
Query: 567  agactgtgtgtgaagcacactgggggtgacagggaggacagaggcccttccctcagtatg 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627  agactgtgtgtgaagcacactgggggtgacagggaggacagaggcccttccctcagtatg 568

                                 
Query: 627  cattctagggataaggctgag 647
            |||||||||||||||||||||
Sbjct: 567  cattctagggataaggctgag 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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