BAC Information

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BAC

Clone NameMSMg01-325L19
Chromosome7 (Build37)
Map Location 98,445,907 - 98,446,564
singlet/doubletsinglet
Overlap geneDlg2
Upstream geneSytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325L19.T7 (MSMg01no325_l19.b1)MSMg01-325L19.TJ (MSMg01no325_l19.g1)
ACCAG443547AG443548
length753749
length of high quality
(start - end)
667 (46 - 712)657 (69 - 725)
definitionCHROMAT_FILE: MSMg01no325_l19.b1 PHD_FILE: MSMg01no325_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:18 2005CHROMAT_FILE: MSMg01no325_l19.g1 PHD_FILE: MSMg01no325_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAAATAATATCCTGTTTAATCGTGCTATCAATAAGTGAAAGTGT
AGCAGGAGATTTTTTGGCTGCTCCACTTTGAGGTCCCAGCGAGTCATAGG
TATACAACAGCCCAGAAACTATCTTGGCTCCGTAGATGAAAGACACACAT
TAGTTCATTTTTAACCTGCCTTACTGGATCAGTGGCTGGGCTCTTCAAAG
CCTCTCATGGCTAGCTTGCCCTTAACCTTTATTCCTTGCTCAACGCCTCT
AAATCTTCCCTCAGCTTAGTTGCCCAGATACCTTTACTCCTAGCTCAACA
CCTCTAAATCTTCCCTCAGCTTTGTTGCCTGGTTACCATCTGTGAAGCTC
ATTGGTCTTACTGTCCAAGATGCGTTTGAGCTGCCTTTCTGTGGGCTTCT
TTCCCTTTCTGCCTACATTTTGGAAGATCTCTTCTGTAGCACTGAGTCTG
TTTTGTCTCTCTTCCCCAAGTATCTTGATTCTCTTTATCTTCTCTGCTAA
CCTGGGAGAATCTGGAAGCACTGTCTCTTTCTTTCTGCCCAGCCATTGGC
TGCTGGCATCTTTGCTGATTGATCAAGGACCAGCTAGGGACAAGGACTTT
AGTGTGTGGACACACAGATCCCTGCCCAAAGACTTTAGTGTGTGGACACA
CAGATCCCTGCCCAAAGCATCAGAAACACCTCCCTACATTAAAGAACCAG
AAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGTAACCCATTTTTTTTTAA
ATTTAAGCATAAGATATGACAAGAGAACCAAACTATTCAGAGTCATATCA
AAAACATAGCGAGCACATGTAGCATATGAAGCCTAGGACTGCATAGGTGT
GGCTGAACACAAACCTGTAAATACAATGGGTTTGGTACTTTTGTTATTAG
ATTACTGTTTCTAGCACAATCTCTGCACATTAGGGTCCTGTTGAAATGTC
TCAAGATTAGATGTGCCCTTAGATTATGTTAGACAGAAGCCAGTCAGACT
TGAACATTCATATGTTATGAGAATCAGTCTGTTTCTCAGACAGTACAGTG
ATTTTGTAGTACAATAAGTCTGTTACATGGTAGTTTCTGAAGAGTGATTT
TTACTCATATAATTTTACACAAATAGATACCTAAAGTTGGAAGTCCTACT
GTGGTAAATATATAAAATTTCTAGACACCTTTAACTGATATGTAAATACA
TAATGTTTTTACATAATTTATTTCTATATTGCTGAATAATTTTTTGCAGT
TTTCCTCTCTATTTTTTCACATTCACATTCTCATAGAATGATCAATACAG
AGGGTATTTAAATGCCTTTTTTTCTACTCTTGAGTTATTGGCAGTAACAA
ACATACTGGAAGAGTTATCACAGAGAAGACACAGCTATGATATGGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_l19.g1 MSMg01no325_l19.g1 CHROMAT_FILE:
MSMg01no325_l19.g1 PHD_FILE: MSMg01no325_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:18 2005
         (657 letters)



>mm_chr7_98445707_98446764
          Length = 1058

 Score = 1197 bits (619), Expect = 0.0
 Identities = 649/659 (98%), Gaps = 3/659 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagttctgtaacccattt-ttttttaaatttaagcataagatatgacaagagaa 59
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagttctgtaacccatttctttttttaatttaagcataagatatgacaagagaa 260

                                                                       
Query: 60  ccaaactattcagagtcatatcaaaaacatagcgagcacatgtagcatatgaagcctagg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaactattcagagtcatatcaaaaacatagcgagcacatgtagcatatgaagcctagg 320

                                                                       
Query: 120 actgcataggtgtggctgaacacaaacctgtaaatacaatgggtttggtacttttgttat 179
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 actgcatgggtgtggctgaacacaaacctgtaaatacaatgggtttgggacttttgttat 380

                                                                       
Query: 180 tagattactgtttctagcacaatctctgcacattagggtcctgttgaaatgtctcaagat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagattactgtttctagcacaatctctgcacattagggtcctgttgaaatgtctcaagat 440

                                                                       
Query: 240 tagatgtgcccttagattatgttagacagaagccagtcagacttgaacattcatatgtta 299
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tagatgtgcccttagattatcttagacagaagccagtcagacttgaacattcatacgtta 500

                                                                       
Query: 300 tgagaatcagtctgtttctcagacagtacagtgattttgtagtacaataagtctgttaca 359
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 tgacaatcagtctgtttctcagacagtacagtgattttgtagtacaataagtctgtcaca 560

                                                                       
Query: 360 tggtagtttctgaagagtgatttttactcatataattttacacaaatagatacctaaagt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggtagtttctgaagagtgatttttactcatataattttacacaaatagatacctaaagt 620

                                                                       
Query: 420 tggaagtcctactgtggtaaatatataaaatttctagacacctttaactgatatgtaaat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggaagtcctactgtggtaaatatataaaatttctagacacctttaactgatatgtaaat 680

                                                                       
Query: 480 acataatgtttttacataatttatttctatattgctgaataattttttgcagttttcctc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acataatgtttttacataatttatttctatattgctgaataattttttgcagttttcctc 740

                                                                       
Query: 540 tctattt-tttcacattcacattctcatagaatgatcaatacagagggtatttaaatgcc 598
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctatttgtttcacattcacattctcatagaatgatcaatacagagggtatttaaatgcc 800

                                                                      
Query: 599 tttttttctactcttgagttattggcagtaacaaacatactggaagagttatcacagag 657
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttttt-ctactcttgagttattggcagtaacaaacatactggaagagttatcacagag 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1058
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1048
Effective search space:   678056
Effective search space used:   678056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)