Query= MSMg01no326_g12.b1 MSMg01no326_g12.b1 CHROMAT_FILE:
MSMg01no326_g12.b1 PHD_FILE: MSMg01no326_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:07 2005
(638 letters)
>mm_chr7_140489010_140490048
Length = 1039
Score = 969 bits (501), Expect = 0.0
Identities = 559/589 (94%), Gaps = 22/589 (3%)
Strand = Plus / Minus
Query: 8 gaattctgtctccctgactcaacttttacaaggccagctgggatcccagggccgtcccca 67
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gaattctgtcaccatgactcaacttttacaaggccagctgggatcccagggccgtcccca 527
Query: 68 ccctacccacctcctgatgatggaatacctcagctcaacacttacaggttgggagctagg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ccctacccacctcctgatgatggaatacctcagctcaacacttacaggttgggagctagg 467
Query: 128 caaggatgtttctccgaggagtttagcatccttagctatatgtggaatagaagctcaggt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 caaggatgtttctccgaggagtttagcatccttagctatatgtggaatagaagctcaggt 407
Query: 188 acaggacatctctgtgacagtgactctctgatggatctcccctctctctaccctaatgga 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 acaggacatctctgtgacagtgactctctgatggatctcccctctctctaccctaatgga 347
Query: 248 aacaataacagggaaaatagatggccactgatctgtgacgagtactctcattcttccacc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aacaataacagggaaaatagatggccactgatctgtgacgagtactctcattcttccacc 287
Query: 308 cactctgtctctcccaaggctaacaagctagtttatacatcacagggaaatggtgggttt 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cactctgtctctcccaaggctaacaagctagtttatacatcacagggaaatggtgggttt 227
Query: 368 ttttttaa-cctttgtaaattgcctctctcatccccaccctcacccccatccctccacat 426
|||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 226 ttttttaaacctttgtaaactgcctctctcatccccaccctcacccacatccctccacat 167
Query: 427 cccca-----------at---t--acatcccaccccaacatccc--atcccatcccaccc 468
||||| || | ||||||| || ||||||| || |||||||||||
Sbjct: 166 ccccaccctcacccccatccctccacatccctcc---acatccccaattccatcccaccc 110
Query: 469 catcccccacactgactctttgttacctccctgttttggcatagcacctgaccctttccc 528
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 109 catgccccacactgactctttgctacctccctgttttggcatagcacctgaccctttccc 50
Query: 529 ttccatctcatctctgcctttggccaactaatttattgattgattctcc 577
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 ttccatctcatctctgcctttggccaactaatttattgattgattctcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_g12.g1 MSMg01no326_g12.g1 CHROMAT_FILE:
MSMg01no326_g12.g1 PHD_FILE: MSMg01no326_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:07 2005
(606 letters)
>mm_chr7_140372534_140373539
Length = 1006
Score = 1149 bits (594), Expect = 0.0
Identities = 603/606 (99%)
Strand = Plus / Plus
Query: 1 tcgacagaggattcttgaatgaccaagaaacaccaaaagaaatgttcaacatccttagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgacagaggattcttgaatgaccaagaaacaccaaaagaaatgttcaacatccttagtc 260
Query: 61 accagggaactgcaaatcaaaatgactctgagattcctctgagattgcatcagaatggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagggaactgcaaatcaaaatgactctgagattcctctgagattgcatcagaatggct 320
Query: 121 aagatcaaaaactcaagtgatagcacatgctggtgaggacgtggagcaaggggaaaaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatcaaaaactcaagtgatagcacatgctggtgaggacgtggagcaaggggaaaaccc 380
Query: 181 tctattgctggtgggagtgcaaactcatacaaccactttggaaatcaatctggctgtatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tctattgctggtgggagtgcaaactcatacaaccactttggaaatcaatctggctgtttc 440
Query: 241 tcggaaaaattggaaacaattctacctcaagacgcagctattctgctcctgggcatatac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcggaaaaattggaaacaattctacctcaagacgcagctattctgctcctgggcatatac 500
Query: 301 ccaaaagatgcactgccatacaaggacacttgctcaactgcccatagaaacaatatccag 360
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ccaaaagatgcactgccatacaaggacacttgctcaactgttcatagaaacaatatccag 560
Query: 361 aaactgaaaaaaaccaaatgtccttcgactgaagaatggatacaaaactgtggtacattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaactgaaaaaaaccaaatgtccttcgactgaagaatggatacaaaactgtggtacattt 620
Query: 421 atacagtggaatattactcagctattaaaaacaaagacatcatgacattttgcagagagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atacagtggaatattactcagctattaaaaacaaagacatcatgacattttgcagagagg 680
Query: 481 cctcttgattcttgctgcctgacaaggagattgttacatttctgtggggacagcgcctcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcttgattcttgctgcctgacaaggagattgttacatttctgtggggacagcgcctcc 740
Query: 541 tgtgaaatggtgtggaatgacacctaagttgcttggggtccagggagctcaggtagactg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgaaatggtgtggaatgacacctaagttgcttggggtccagggagctcaggtagactg 800
Query: 601 aggctg 606
||||||
Sbjct: 801 aggctg 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
