BAC Information

Click to search

BAC

Clone NameMSMg01-326H23
Chromosome7 (Build37)
Map Location 92,238,995 - 92,239,309
singlet/doubletsinglet
Overlap genenone
Upstream gene2210412D01Rik, Arnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641
Downstream geneEG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326H23.T7 (MSMg01no326_h23.b1)MSMg01-326H23.TJ (MSMg01no326_h23.g1)
ACCAG444106AG444107
length731728
length of high quality
(start - end)
315 (108 - 422)329 (89 - 417)
definitionCHROMAT_FILE: MSMg01no326_h23.b1 PHD_FILE: MSMg01no326_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:13 2005CHROMAT_FILE: MSMg01no326_h23.g1 PHD_FILE: MSMg01no326_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:13 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATTCCTTGACGAAATAAGAGGAGAAATGCAGAAAACAAAAACAAA
AACAAGAAACACAAAAAACCCACAAAACACCCAAAAAACAAAAAAACAAA
GCAAAACCAAAAACAAAGAAACAGAAACGATTGTCTGTTTATCAGTTGCA
ATTATTATCCAAAATGATAAAATCATAGCCCTTAAAGAGTTCCATATGAA
CTATAAGAAAATTTTAATGTCATCAGCAAAAGTTGTGATAGCTCATGGTG
ACAAAGACTCACCCATAGTTTGCTCTCTTTGAGTGTGAATTTTGAGGCAT
TAGGAGAATCTGGGTCAGTGTGTCACAATTTGATATTATCACAATTCTAG
GAGATTTCATGCTATACTCCTCCCTTGGGAATTTCATTTCTTCATACCAG
CGACCTGAAATATCTAGTTTTAAACAATTTATACAAACAGTACACCACAA
TTTATTCAAACCACAGCATTGAATTTTCCTTTGTTAAATTATGGTGGACA
TATTTTAGATGTTCTTTGCCACCATCTAATTGTAAGAAGCTGAAAATTGT
CCAACCAAAGCTGTATTTAAATGGTTATTCATGACACCACTTGGAATGAC
CATGAGTAATACATGCTATAACATATACAATGGTATGTATGCTGTGGACC
ACTCACTCCATGAGATGCTTCTGCAACAAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGAGATGTAGAGTAATTGTCCAATAC
TTGTAGATACTCCCCATTTAGGTGTTGTAAGTACAATTAAATATCTTCTA
TGATTTCTGCAGTAGTAATTAGGAATGAATTCCTTACTTTTTAATGCCAA
ATCAGTTCTCTCACCATATAATTCTAGGCCACATTCAATATTAACTAGCA
GAGAAATATTGGGTAAAATATGGTCATTCTTATTTATTTCTTCCATGGCA
AGATAAACAGAGAAAATCAAATGGTTGGTCTTGGGTGTCACCCTGAAAAC
AGAGCAGTACAGAATATAATTTCTTAGCCGGGCTTGGTGGTGCACGCCTT
TAATCCCAGCACTTATGAGGCCCAGGCAAGCAGATTTCTGAGTTCGAGTC
CATCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTACCCAGAGAA
ACCCTGCCTCGAAAAACCAAAATAATAATGATAATAATTAATAATAATAA
TTATTATTATTATTTCTAAAACTGTACAAGCAAAAGTCAGAAAAATCCTA
GCATATAGATAGGAATTCAGCACAATAATCACACAGTTATGGACTGGTTT
TAACTGACAGGAAAGTGAATATACAATAAGTTTACATTAAATTCTCTAAA
GAGCTACAAAATAAATTTCTGGTGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_h23.b1 MSMg01no326_h23.b1 CHROMAT_FILE:
MSMg01no326_h23.b1 PHD_FILE: MSMg01no326_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:13 2005
         (315 letters)



>mm_chr7_92238795_92239509
          Length = 715

 Score =  547 bits (283), Expect = e-160
 Identities = 307/315 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacacaaaaaacccacaaaacacccaaaaaacaaaaaaacaaagcaaaaccaaaaacaaa 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacacaaaaaacccaccaaacacccaaaaaacaaaaaaacaaagcaaaaccaaaaacaaa 260

                                                                       
Query: 61  gaaacagaaacgattgtctgtttatcagttgcaattattatccaaaatgataaaatcata 120
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacaaaaacgattgtctgtttatcagttgcaattattatccaaaatgataaaatcata 320

                                                                       
Query: 121 gcccttaaagagttccatatgaactataagaaaattttaatgtcatcagcaaaagttgtg 180
           | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccttaaagagttccatatgaattataagaaaattttaatgtcatcagcaaaagttgtg 380

                                                                       
Query: 181 atagctcatggtgacaaagactcacccatagtttgctctctttgagtgtgaattttgagg 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 atagctcatggtgacaaagactcacccatagtttgctctcattgagtgtgaattttgagg 440

                                                                       
Query: 241 cattaggagaatctgggtcagtgtgtcacaatttgatattatcacaattctaggagattt 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 cattaggagaatctgggtcagtgtgtaacaatttgatattatcacaattctaggagattt 500

                          
Query: 301 catgctatactcctc 315
            ||||||||||||||
Sbjct: 501 tatgctatactcctc 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)