BAC Information

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BAC

Clone NameMSMg01-326I08
Chromosome7 (Build37)
Map Location 122,388,044 - 122,559,117
singlet/doubletdoublet
Overlap genenone
Upstream geneCopb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
Downstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326I08.T7 (MSMg01no326_i08.b1)MSMg01-326I08.TJ (MSMg01no326_i08.g1)
ACCAG444123AG444124
length725714
length of high quality
(start - end)
590 (46 - 635)479 (82 - 560)
definitionCHROMAT_FILE: MSMg01no326_i08.b1 PHD_FILE: MSMg01no326_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:14 2005CHROMAT_FILE: MSMg01no326_i08.g1 PHD_FILE: MSMg01no326_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,558,532 - 122,559,117)(122,388,044 - 122,388,522)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGTTTACCCTCTCTGGGCCTTTGGTGGAACAAAAGGAGAGCCTGGG
TTGCAGAGTTGATGAGTGACATCCAGGGTCAAGCAGAGGTCAGTGGATAG
GAAAACAATTTGCCTAGACCAGAGGACCTGGGAATACAAAGGGAGGACTG
TGTCCCTAGGAAAGCCAGTGTGTCTAATTTCTCACCACACCCCAGCTGAG
CTGTGTCAGGTGGTCCCACGGAGGGTGGGGGAGGGGAACTCCTTTGACTG
AACGACTGAGAGGCTTCGTGGAGGCCACTCAGTTTTGCTTTCAAATAATT
TCTTCAGGGCTCCCAAGTGCCTTGGTGCTGGTACTCATTAGCAGGCTACA
GAACTTAAAGAGAGACCCCAATTAAGGAGACCGTTCCCATCACTTACTGT
GAGGGGCAGGAGGGAGTGCCCCAAGGCCTGCTGGGGCCCTTCTGCCTACA
CATGAAGGCCTCCGGGCTCCCAGCATCAGAATTGAGCTCAGGAGCAAATG
CCAAAGCCACAGGTCAGGAGGAGTCTGCTATTGGGAGCGAGCCATCGTTA
TTATATTTTCTCAAATATAAATTCTGGAAAAGTACACAGGACCGGGGCAT
CTGGGGTGCCTGGGGATGGGTCTGACTCTTACTTGTCACAGAAGTGCTAT
TATTGACTCTGCTGCTAATGAGGAA
NNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGCAAAATTATC
TACAATCAACATGAAATCAAAACGTTGCAAGGGCTGTGCATCCTCTAGAG
TTTCCAGTAAAATATCTATTTCTTGCATTTTCCAGTTTCTGGCAGCTGCT
AGCACTTGTTGGCTTGTGGCTGTATCATGCAAATCTCTGCCATCATCTTC
TCACGATCTTTGCCTCTTCCATTTGTCTCTCTTTCCCCTTGTCTTTTATA
AAGTTGTTTTGGATGGTGTGTAGGTCCATCCATATAATCCACAGTTATGT
CACCGTTCTGAAGTCTCCAACTAGTCACATCCACAAGGGTACCTTTTCTA
TTTAAGATAACATTTACTAGCCCCCACAATAGGAGGTTGGTATTTTTGAG
AATCATTATTCAGTTTATCCACAGTACTTATAAAATAAGAGTCTAAGATC
CAAGTGTGATTCAACTATAAAATCCTTGCTTTTCATCTACACAAGCTTGA
TTTCTTCTGGGCTCAGAGTCTTGATTTTCAGAGCAGGGGACACAAAGTGT
GTTCCACTACACCCAAAATTGTAAAGTGTTACCAGGTCATTTGGAGATTC
TGCGCAAGCATAGCCACAGGTAATGAATGAATGGCGAAACAGGCATGAAT
GTGTCTACATTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_i08.b1 MSMg01no326_i08.b1 CHROMAT_FILE:
MSMg01no326_i08.b1 PHD_FILE: MSMg01no326_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:14 2005
         (590 letters)



>mm_chr7_122558328_122559317
          Length = 990

 Score = 1056 bits (546), Expect = 0.0
 Identities = 576/586 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcgtttaccctctctgggcctttggtggaacaaaaggagagcctgggttgcagagt 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gaattcatttaccctctctgggcctttggtggaacaaaaggagagcctgggttgcagagt 731

                                                                       
Query: 65  tgatgagtgacatccagggtcaagcagaggtcagtggataggaaaacaatttgcctagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 tgatgagtgacatccagggtcaagcagaggtcagtggataggaaaacaatttgcctagac 671

                                                                       
Query: 125 cagaggacctgggaatacaaagggaggactgtgtccctaggaaagccagtgtgtctaatt 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 670 cagaggacctgggaatacaaagggaggactgtgtccctaggaacgccagtgtgtctaatt 611

                                                                       
Query: 185 tctcaccacaccccagctgagctgtgtcaggtggtcccacggagggtgggggaggggaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 610 tctcaccacaccccagctgagctgtgtcaggtggtcccacggagggtgggggaggagaac 551

                                                                       
Query: 245 tcctttgactgaacgactgagaggcttcgtggaggccactcagttttgctttcaaataat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcctttgactgaacgactgagaggcttcgtggaggccactcagttttgctttcaaataat 491

                                                                       
Query: 305 ttcttcagggctcccaagtgccttggtgctggtactcattagcaggctacagaacttaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttcttcagggctcccaagtgccttggtgctggtactcattagcaggctacagaacttaaa 431

                                                                       
Query: 365 gagagaccccaattaaggagaccgttcccatcacttactgtgaggggcaggagggagtgc 424
           ||||||  | ||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 430 gagagagtctaattaaggagaccattcccatcacttactgtgaggggcgggagggagtgc 371

                                                                       
Query: 425 cccaaggcctgctggggcccttctgcctacacatgaaggcctccgggctcccagcatcag 484
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 370 cccaaggcctgctggggcccttctgcctacacatgaaggcctctgggctcccagcatcag 311

                                                                       
Query: 485 aattgagctcaggagcaaatgccaaagccacaggtcaggaggagtctgctattgggagcg 544
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 310 aattgagctcaggagcaaatgccgaagccacaggtcaggaggagtctgctattgggagcg 251

                                                         
Query: 545 agccatcgttattatattttctcaaatataaattctggaaaagtac 590
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agccatcgttattatattttctcaaatataaattctggaaaagtac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no326_i08.g1 MSMg01no326_i08.g1 CHROMAT_FILE:
MSMg01no326_i08.g1 PHD_FILE: MSMg01no326_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:15 2005
         (479 letters)



>mm_chr7_122387844_122388722
          Length = 879

 Score =  872 bits (451), Expect = 0.0
 Identities = 472/479 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagcaaaattatctacaatcaacatgaaatcaaaacgttgcaagggctgtgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagcaaaattatctacaatcaacatgaaatcaaaacgttgcaagggctgtgcat 260

                                                                       
Query: 61  cctctagagtttccagtaaaatatctatttcttgcattttccagtttctggcagctgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctagagtttccagtaaaatatctatttcttgcattttccagtttctggcagctgcta 320

                                                                       
Query: 121 gcacttgttggcttgtggctgtatcatgcaaatctctgccatcatcttctcacgatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacttgttggcttgtggctgtatcatgcaaatctctgccatcatcttctcacgatcttt 380

                                                                       
Query: 181 gcctcttccatttgtctctctttccccttgtcttttataaagttgttttggatggtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctcttccatttgtctctctttccccttgtcttttataaagttgttttggatggtgtgt 440

                                                                       
Query: 241 aggtccatccatataatccacagttatgtcaccgttctgaagtctccaactagtcacatc 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtccatccacataatccacagttatgtcaccgttctgaagtctccaactagtcacatc 500

                                                                       
Query: 301 cacaagggtaccttttctatttaagataacatttactagcccccacaataggaggttggt 360
           ||||||||||||||||||||||||||||||||||||| |  |  | ||||||||||||||
Sbjct: 501 cacaagggtaccttttctatttaagataacatttactggttctaaaaataggaggttggt 560

                                                                       
Query: 361 atttttgagaatcattattcagtttatccacagtacttataaaataagagtctaagatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttttgagaatcattattcagtttatccacagtacttataaaataagagtctaagatcc 620

                                                                      
Query: 421 aagtgtgattcaactataaaatccttgcttttcatctacacaagcttgatttcttctgg 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtgtgattcaactataaaatccttgcttttcatctacacaagcttgatttcttctgg 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)