BAC Information

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BAC

Clone NameMSMg01-326K14
Chromosome7 (Build37)
Map Location 88,788,025 - 88,788,544
singlet/doubletsinglet
Overlap geneHomer2
Upstream geneCrtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1
Downstream gene2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326K14.T7 (MSMg01no326_k14.b1)MSMg01-326K14.TJ (MSMg01no326_k14.g1)
ACCAG444225AG444226
length7321,312
length of high quality
(start - end)
537 (70 - 606)---
definitionCHROMAT_FILE: MSMg01no326_k14.b1 PHD_FILE: MSMg01no326_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:24 2005CHROMAT_FILE: MSMg01no326_k14.g1 PHD_FILE: MSMg01no326_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGG
AATTCATTACTTACTGACACCAACACAGCAAAGCACTGCGTTGCGCACAC
TAACCTACTGAATGCCCTAACTCTGCCACATAGCTGTTACAGAGTGCGGC
TGTTTACCTGGGTGACCACATGGCTGCTGTCCAGCAAAGGATCATGCTAG
GTATCCCCAGCTGGGGAAAGAACACCGTTTACAGGCTGTAGTATAGCTCT
CAACTGCGTGCCAAATGCAGTATTTCAGATTCAGCACAGCAAAAATAAAG
TAAAATAAATAAAAGTGTGTTGTATGATTTCTAATGACTATGAATCACTT
TCACACCATGATAAAGTCAAAGACTCTTAAGTGGAGTCATGTTCCATATT
CCAAAAGTATGTGTGCCCCACTCCCTAATTACATGATCCTCATCCATCCA
TTAAAAGATTATCCTCTCCTGAAACTGTAACAGGCGTTCCCTTGGTAATT
TGGCCATTCATTTGTGTGTGTGCGTGTCTGTGTCTCTCTGTGTGTGTGTG
GTTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
CGAGACCCTTAACCATAGGTTGCAGTCGTCTTGACCAGCCAGCGAGTGAT
TTATGTTATGGTCTCTTGCAGCTTTTCTGTTTTCCTTTGTGACAAGAAAA
TGTTCATAGGCCTGTATACTCTATGTACATGG
CCCCCCGACTAGAGAGCAGTAGACGGTCATGTTTGATATCACTGATATGC
ACAATAAACAGGGAGCGAGGATTAGTATGAACAGACTCCGCTGCCACGCG
CANGGAGCGAGGTAACATACGCGGGCGGGGTTCACTGACAAGCGTTAATA
ACCGCAGACCGCTGAATGTAATATCCTCTTCATAATGTGCCCTATTATAC
GATGTGTCCGTTTTCCAAACGCCACATTTATGTAATACTACGAAAATATA
TTACTAAGCTAGAACACACTTAANACTAGACGCGCGACATACGTCTCTGT
TGGCATATGTGTGATTTTGTGTATGTTTGTTGCTGCCCGCTCGCCAGGTG
TTTCTCACGATTAGCCTTGTTGCCGCGTGTTCCCCGTGAGACGAGTGGAC
TATTAAGCGCGGAGGTTCGCGGCTAGCCGCGAATGACCACTTACCGTGTC
TTTGTCCCCGTCGCTTTATATATCTATTATCACTATCTCATTATCTCCTT
CATCTACCGTATAGACAGCAAAAATATAGGTAATGTGGTTGCTGTACATA
TTATGTGACAATGAGAGTGTGCTGAGAGCGTGGACCGAGCGACGCACGAA
GGAGATGACATAATGAGTATGAGAACAATGTGTGTGTTTGCGTAAAGCAA
TATAGAGAGCGTACGTATAGCGCCGCCTTTAGCGCATACGATTGCTAGCA
TCGTTTGTTGAGGTCGAGTGTACGCAGCGCGCTTATAGTCAGAATTGTAT
GACGGACTCACATCTTCATATTATCACTCTAATAATACAGATACAGTAAG
TGCGTAAACATAACGGATATCACTATGATCATATTATACGTCAGATATTA
GTGTGTCATTACATATTAGCATATATATAGCAAACGCCATGTCTATGGGC
GCCCGGCGTGCGTTACGACCGCGAGTACATAGCGCGACAGGATATAGTAT
AACATAGTGCAGTGCGCAGAGACGATGTGACTCATCACACATACGAATGT
GGANTAATAATAATATCTACGTGTTATATACGCGCGTGGCGATATCTTAT
GTCTGCTCATATCGCACGTACCCGCACAGACATACGACGTGACCGCGAGC
GCGACACATACGTGATGCGCAAGAAGATACGATCCAGTGATGTGCGCGTG
AACTGAGTAGTNGAGCGCGCCGCGTGACGTGGCGACTAATAGTGAACGCA
CGACGCNGACGATACGTTGTGTGAGAGTCGGTAATGCACTCGACGCTTGA
CTGATGACGCAGCGATCTATATAACACGNTAACAGAGTTATAGTGCGCGC
GGATCGCGCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_k14.b1 MSMg01no326_k14.b1 CHROMAT_FILE:
MSMg01no326_k14.b1 PHD_FILE: MSMg01no326_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:24 2005
         (537 letters)



>mm_chr7_88787902_88788838
          Length = 937

 Score =  928 bits (480), Expect = 0.0
 Identities = 511/522 (97%), Gaps = 2/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaacacagcaaagcactgcgttgcgcacactaacctactgaatgccctaactctgccac 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ccaatacagcaaagcactgcgttgcgcacactaacctactgaatgccctaactctgccac 584

                                                                       
Query: 61  atagctgttacagagtgcggctgtttacctgggtgaccacatggctgctgtccagcaaag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atagctgctacagagtgcggctgtttacctgggtgaccacatggctgctgtccagcaaag 524

                                                                       
Query: 121 gatcatgctaggtatccccagctggggaaagaacaccgtttacaggctgtagtatagctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gatcatgctaggtatccccagctggggaaagaacaccgtttacaggctgtagtatagctc 464

                                                                       
Query: 181 tcaactgcgtgccaaatgcagtatttcagattcagcacagcaaaaataaagtaaaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcaactgcgtgccaaatgcagtatttcagattcagcacagcaaaaataaagtaaaataaa 404

                                                                       
Query: 241 taaaagtgtgttgtatgatttctaatgactatgaatcactttcacaccatgataaagtca 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 taaaagtgtgaagtatgatttctaatgactatgaatcactttcacaccatgataaagtca 344

                                                                       
Query: 301 aagactcttaagtggagtcatgttccatattccaaaagtatgtgtgccccactccctaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 343 aagactcttaagtggagtcatgttccatattccaaaagtatgtgtgggccactccctaat 284

                                                                       
Query: 361 tacatgatcctcatccatccattaaaagattatcctctcctgaaactgtaacaggcgttc 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 283 tacatgatcctcatccatccattaagagattatcctctcctgaaactgtaacaggcgttc 224

                                                                       
Query: 421 ccttggtaatttggccattcatttgtgtgtgtgcgtgtctgtgtctctctgtgtgtgtgt 480
           |||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||
Sbjct: 223 ccttggtaatttagccattcatttgtgtgtgtgcatgtctgtgtctct--gtgtgtgtgt 166

                                                     
Query: 481 ggttatgagagagagagagagagagagagagagagagagaga 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ggttatgagagagagagagagagagagagagagagagagaga 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)