BAC Information

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BAC

Clone NameMSMg01-326P03
Chromosome7 (Build37)
Map Location 94,404,790 - 94,405,157
singlet/doubletsinglet
Overlap geneNox4
Upstream geneOlfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477
Downstream geneTyr, Grm5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326P03.T7 (MSMg01no326_p03.b1)MSMg01-326P03.TJ (MSMg01no326_p03.g1)
ACCAG444433AG444434
length710723
length of high quality
(start - end)
369 (36 - 404)554 (77 - 630)
definitionCHROMAT_FILE: MSMg01no326_p03.b1 PHD_FILE: MSMg01no326_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:44 2005CHROMAT_FILE: MSMg01no326_p03.g1 PHD_FILE: MSMg01no326_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAAA
GTCACCTCTCTGAAGTCAGATTTGGTGACATTTAAGATATCAAAATAATA
TACTGATACCACTGCTCATATGTTCATTGATTTGACTTTCTTTAAGGACA
TGAAGAAAGTTATATGAGAGTCATATAATAACATTATTCAAAATAATGGT
AGCAGGGAAGGCTGGAGAGGTGGCTCTTTGTTTAAGAATACTTGCTGCTC
TTCCAATGGACCCAGATTTGCTTCCTCACAACTACCTGGTGGTTTGCAAC
CTTCTAATACTCCAGTCCAAGGGAATTCAATGGTTTCTTCTGACTTTGGA
AGAAACCAGACACGTGATGATACAAAGACGTACAGAGAGGCAAATTACAC
ATCCACACCCAAGATTAAAAAAATCTAAATTTTTTCATAATATAATATTC
TTGTCTTTGCTTTTGGTCAAGCACCTATTGACAAATGTAAATGTATAATA
ACAAACATAAACACACATCCAAACAATCCTATTCAGGACCATTGTGAAAG
GATGTGTATGAACCTCAGCTAAGAACAAAGAATGTAGGCCTGCAAGAGAG
TTCAGCATATATAGACAATCATTGCCAAACCTGGTAGCATGAGTTTTATC
CCTGAGATGCATGCCTAAGATGGCCAGACAAAAGAAGTCCTAAAAATTGA
CTTTCCTTAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACCACGCTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAGGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAATAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATCTG
CTAAACACATGAAACTCAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_p03.b1 MSMg01no326_p03.b1 CHROMAT_FILE:
MSMg01no326_p03.b1 PHD_FILE: MSMg01no326_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:44 2005
         (369 letters)



>mm_chr7_94404781_94405552
          Length = 772

 Score =  650 bits (336), Expect = 0.0
 Identities = 359/368 (97%), Gaps = 3/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaaagtcacctctctgaagtcagatttggtgacatttaagatatcaaaataat 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaattcacaaagtcagttctctgaagtcagatttggtgacatttaagatatcaaaataat 318

                                                                       
Query: 65  atactgataccactgctcata---tgttcattgatttgactttctttaaggacatgaaga 121
           |||||||||||||||||||||   ||||||||||||| |||||||||||| |||||||||
Sbjct: 317 atactgataccactgctcataaagtgttcattgatttcactttctttaagaacatgaaga 258

                                                                       
Query: 122 aagttatatgagagtcatataataacattattcaaaataatggtagcagggaaggctgga 181
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 257 aagttatatgagagtcatataataacattattcaaaataatagtagcagggaaggctgga 198

                                                                       
Query: 182 gaggtggctctttgtttaagaatacttgctgctcttccaatggacccagatttgcttcct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaggtggctctttgtttaagaatacttgctgctcttccaatggacccagatttgcttcct 138

                                                                       
Query: 242 cacaactacctggtggtttgcaaccttctaatactccagtccaagggaattcaatggttt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cacaactacctggtggtttgcaaccttctaatactccagtccaagggaattcaatggttt 78

                                                                       
Query: 302 cttctgactttggaagaaaccagacacgtgatgatacaaagacgtacagagaggcaaatt 361
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  cttctgacttttgaagaaaccagacacgtgatgatacaaagacgtacagagaggcaaatt 18

                   
Query: 362 acacatcc 369
           ||||||||
Sbjct: 17  acacatcc 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 772
Length adjustment: 9
Effective length of query: 360
Effective length of database: 763
Effective search space:   274680
Effective search space used:   274680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)