BAC Information

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BAC

Clone NameMSMg01-327J05
Chromosome7 (Build37)
Map Location 127,315,640 - 127,487,434
singlet/doubletdoublet
Overlap geneAnks4b, Crym, Abca14, Abca15
Upstream geneGpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2
Downstream geneAbca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327J05.T7 (MSMg01no327_j05.b1)MSMg01-327J05.TJ (MSMg01no327_j05.g1)
ACCAG444899AG444900
length745729
length of high quality
(start - end)
379 (45 - 423)345 (73 - 417)
definitionCHROMAT_FILE: MSMg01no327_j05.b1 PHD_FILE: MSMg01no327_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:30 2005CHROMAT_FILE: MSMg01no327_j05.g1 PHD_FILE: MSMg01no327_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,315,640 - 127,316,007)(127,487,093 - 127,487,434)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTGTCTTTGCGCCATGGGGGAGTCTGAGTTGGGATGGATTCCAG
GGTTATCAGCTCATGAGAGATGGATTTAGTGTGGAGAAAACATTGCAAAA
CTGAGTTTACGAGAGGGCACTTGGCATGTGTTTGAATTACAAGTCTGGCA
AAACTAGAATTTAATAAATTCATTGAATGAATCAACAAAAAGACCACCTA
CATGAAATAGTGGCATATGGGAATGGGATATGTTGAAGCTGTCCTCTGTG
GTTAGGGTAGCCCACAGCAATCTCCACCATGCAAATGAGGGCAGTCCTGA
TTGGCTAATATTTGATTTCCAGGACATACTGGGCTCACATGGTACAGCCT
GTGGTTCTGAGTTGTACTTGCCCCCCACCGGCCTTATTCACTTACATCAT
TCTGCAACCAGAAAGTGCTGTTTCCCTACTGCACTAGGGTGTAGCAGAGA
CTGATGGACAGTTCCTCCATAGACTGTCCTACCTATGTATCCTTCCCTTC
TGCCTACACCCTACCCAGACCCTATTGTTGATGTCAAGAAACACTTGCTT
ACCAGGACCTTGTTATACCTGTCCACCTTGACACGATCTCGTCATATCCC
GGCTACCATTTATCGACGCTCCAATGCCCATTTTCTAACCCCTCCTCACC
CGTCTCCCTTCCCCCTTTTACTCCCGATATCTTACTTCGCAATTC
CATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTATGAAGCAAAGCCAGCCTTCAACAG
TGCGAGAGAGACTTCCTGGTTCTGGGACCATACATCAGGAGTTTGGTGTC
CTCAATACATTTCTGTTGTTGTTGTTTTATTATATTATTTACTACTAATA
ACTAAAAAGCTGGGGAAAACACTCCAGTTATCTGTCTGAGAGGAGAGGCG
ATACCTTTAATACTTGCTAGAGCTCTACAGAAGTATTTTTTTTATTATCA
TTGATACTAAAGTCATAAATTGCTCACATTATGGCATTAGTTATAATTTA
TAAAGGAAAATAATCAGAAGCAATATAGAAGAGGAAATGAGACGAGAATC
AAAGTGGAAGATACTAAGAAGCACCCCACGAGGCACATAAAATAGATGGT
TGAGTGTCAAACGGAACTCCTTCCTGACCAGGAATTACCTTACTTGTTTA
CATGGATTTAATGCAACAGCGAGAGTTAAATCCTGAAGTGGCTAAGGAGG
CAGAAGATGTTGGAAGCTCAAAGATACATATTTAATTGTGAGTCCAGAAT
AAAATAATTCTTGCCATATCCCAGAGAGAGTGAAATGGCTAAACTATCTT
TATGAAATGATAGATTTCAATACTCTAAGGATACTGTGCATATTTTCTTG
AGCTAAGGCCTTGCTTTGTATCCCTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_j05.b1 MSMg01no327_j05.b1 CHROMAT_FILE:
MSMg01no327_j05.b1 PHD_FILE: MSMg01no327_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:30 2005
         (379 letters)



>mm_chr7_127315432_127316210
          Length = 779

 Score =  665 bits (344), Expect = 0.0
 Identities = 362/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcatttgtctttgcgccatgggggagtctgagttgggatggattccagggttatcagctc 68
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcatttgtctttgtggtatgggggagtctgagttgggatggattccagggttatcagctc 268

                                                                       
Query: 69  atgagagatggatttagtgtggagaaaacattgcaaaactgagtttacgagagggcactt 128
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 269 atgagagatggatttagtgtggagaaaacattgcaaaactgagtttacaagagggcactt 328

                                                                       
Query: 129 ggcatgtgtttgaattacaagtctggcaaaactagaatttaataaattcattgaatgaat 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggcatgtgtttgaattacaagtctggcaaaactagaatttaataaattcattgaatgaat 388

                                                                       
Query: 189 caacaaaaagaccacctacatgaaatagtggcatatgggaatgggatatgttgaagctgt 248
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 389 caacaaaaagaccacctacatgaaatagtggcatatgggaatgtgatatgttgaagctgt 448

                                                                       
Query: 249 cctctgtggttagggtagcccacagcaatctccaccatgcaaatgagggcagtcctgatt 308
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cctctatggttagggtagcccacagcaatctccaccatgcaaatgagggcagtcctgatt 508

                                                                       
Query: 309 ggctaatatttgatttccaggacatactgggctcacatggtacagcctgtggttctgagt 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggctaatatttgatttccaggacatactgggctcacatggtacagcctgtggttctgagt 568

                   
Query: 369 tgtacttg 376
           ||||||||
Sbjct: 569 tgtacttg 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no327_j05.g1 MSMg01no327_j05.g1 CHROMAT_FILE:
MSMg01no327_j05.g1 PHD_FILE: MSMg01no327_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:30 2005
         (345 letters)



>mm_chr7_127486893_127487637
          Length = 745

 Score =  545 bits (282), Expect = e-159
 Identities = 327/342 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtatgaagcaaagccagccttcaacagtgcgagagagacttcctggttctgggaccata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 542 tgtatgaagcaaagccagccttcaacagtgcgagagagacttcctggttccgggaccata 483

                                                                       
Query: 61  catcaggagtttggtgtcctcaatacatttctgttgttgttgttttattatattatttac 120
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 482 catcaggagtttggtgtcctcaatacatttttgttgttgttgttttattatattatttgc 423

                                                                       
Query: 121 tactaataactaaaaagctggggaaaacactccagttatctgtctgagaggagaggcgat 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 422 tactaataactaaaaagctgggggaaacactccagttatctgtctgagaggagaggctat 363

                                                                       
Query: 181 acctttaatacttgctagagctctacagaagtattttttttattatcattgatactaaag 240
           ||||||||||||||||||||||||||||||||| |||||  |||||| ||| | ||||||
Sbjct: 362 acctttaatacttgctagagctctacagaagtagtttttaaattatcgttggtgctaaag 303

                                                                       
Query: 241 tcataaattgctcacattatggcattagttataatttataaaggaaaataatcagaagca 300
           |||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct: 302 tcataaattgctcacaatatggcattaattgtaatttataaaggaaaataatcagaagca 243

                                                     
Query: 301 atatagaagaggaaatgagacgagaatcaaagtggaagatac 342
           |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 242 atatagaagaggaaatgagatgagaatcaaagtggaagatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)