Query= MSMg01no328_h19.b1 MSMg01no328_h19.b1 CHROMAT_FILE:
MSMg01no328_h19.b1 PHD_FILE: MSMg01no328_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:39 2005
(229 letters)
>mm_chr7_131820935_131821564
Length = 630
Score = 429 bits (222), Expect = e-125
Identities = 228/230 (99%), Gaps = 1/230 (0%)
Strand = Plus / Minus
Query: 1 ctccctccttccatccatccagggtagagtctgagctgatctctgggccttcatatcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctccctccttccatccatccagggtagagtctgagctgatctctgggccttcatatcctt 371
Query: 61 caggaacaactcaaacattccaggattttctattcactttctataaatgctgcagactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 caggaacaactcaaacattccaggattttctattcactttctataaatgctgcagactct 311
Query: 121 tccaatgctgctcctctgtcctagataaactttctgtataattctttggctacatcagtg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 310 tccaatgctgctcctctgtcctagataaactttctgtatgattctttggctacatcagtg 251
Query: 181 tccaggaatacgaggatattggttaacagtcactccaaa-ttttggagat 229
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 250 tccaggaatacgaggatattggttaacagtcactccaaaattttggagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 630
Length adjustment: 9
Effective length of query: 220
Effective length of database: 621
Effective search space: 136620
Effective search space used: 136620
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no328_h19.g1 MSMg01no328_h19.g1 CHROMAT_FILE:
MSMg01no328_h19.g1 PHD_FILE: MSMg01no328_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:39 2005
(553 letters)
>mm_chr7_131643888_131644840
Length = 953
Score = 1027 bits (531), Expect = 0.0
Identities = 546/551 (99%)
Strand = Plus / Plus
Query: 1 ataggcgagacgagagaggggcagaggcagagtaagcaatccatgctttagtgaagtttt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ataggcgagacgagagaggggcagaggcagagtaagtaatccatgctttagtgaagtttt 260
Query: 61 ccagttgctaagcagacccagactctgaattgcctgagtctatcactgtgcattgtaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagttgctaagcagacccagactctgaattgcctgagtctatcactgtgcattgtaatt 320
Query: 121 tagtaaatcatttccagcggtggggtgtttgcttattcaatcaagaagcagatttatgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtaaatcatttccagcggtggggtgtttgcttattcaatcaagaagcagatttatgcc 380
Query: 181 taattctggcagcgtctctacaaagtgctatgagcttaggagactccccagctcagaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattctggcagcgtctctacaaagtgctatgagcttaggagactccccagctcagaagc 440
Query: 241 cagattgcagcacagtgatttatgggatctgggaggttggttccacagccatggggcata 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 cagattgcagcacagtgatttatgggatctgggaggttggtcccacagccatggggcata 500
Query: 301 gggcataaatctaaagcttatgagaagttctgattcagcttggcacaccttggccatgca 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 gggcataaatctaaagcttatgagaagttctgattcagcttggcataccttggccatgca 560
Query: 361 acagccatgtgtaccttcaccttactgagtattttccagagcctgggatccctacattgc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagccatgtgtaccttcaccttactgagtattttccagagcctgggatccctacattgt 620
Query: 421 gacatgaagacctcctgaataagaggatggcatcttccaaagagaaacacctgctaaaga 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 gacatgaagacctcctgaataagaggatggcatcttccgaagagaaacacctgctaaaga 680
Query: 481 aagtatgagagaagaggagctggggaactcattcattgggtgaatcatttgtcatgcaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtatgagagaagaggagctggggaactcattcattgggtgaatcatttgtcatgcaag 740
Query: 541 tgtgaaggctg 551
|||||||||||
Sbjct: 741 tgtgaaggctg 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
