CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCTGATCCGCGGAAT
TCTACTGTGCCTTTCCCAAACAATAAAATGGTGGGGTTTGCTGTCGAAAA
AATATGCCTTGATGTTTATTTTCAAGCAGGATGTCCATTCCTCAGCTCAT
AATGCAGTATCTGGAACCATGCCTGCCCATAATGATGCTGGATATATTCA
CAGCGTGAAGCCAGTCACTGTGGCTGGAAAGGTAGCTATCTTTGTCTTCT
CTGAACCTTATTCTATACATTTCTAGGAGCGTTCCACTGCCTAGTCACAA
TGTTCAGACCCGTCATGAGCACATCTCTACTTCAGGACATGTGAGGCCTT
TGGGATATTTTCCAACTGAAGCTGCCGACAAAGGTCCCTTTCTTTCCCTC
TTGGGTCGGTAAAGGCCCACCCCACCGATCTGAAGCAATGTCCCTTCTTC
AGCAGACAGTTGTCCTAGACCCTGTAGTTGACACGAGAGCACTCATGTAA
GACAGTGAGGCCAACTAAGAATGACATTNAGCCATGTTATCTGTTGTCCC
CGAGGTCATAACTCTGTTTGTATTTTGCTTGTCTGAATGATCGAATACCT
CTTTTTTCACTGATTTACATATTTTATTGGTTGCTTTTATTATTTCCTGA
ATCTTTCAAGCTTTTAGCCACTATTCTATTTTTTTTTTTTTCTTAAAATA
ATAAACTTCTACTACACTAATTCTATTACTAAAATAATAAAATGTCATAT
TTCTGTATGTCCTATTCTTTCAACTTTCTTC

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGCAATAATTTCCTCAACTTTCCTTCAAGATGGAC
TGTGAGCTGTAACATAATCTTGATCTTCAGGTTGCTTTTGGTCTTGGTGT
TTTATCACAGCAAATCAAAACAAAGGGTCTTATTACAACACTGAAGAGTA
CGGCCAACTCTTGGTGACAAGTGATCCAGTAGATTGTATAGGGCGTTTCT
CTGAAGCCTGACTCGGGATCAAGTCACTAAATCTCTCTGGGTTTATGCTG
TTCTTCTCTGTTGTATTGTGGGGTGTTGAGTCGTTTCAGAGGCAAACAGA
GCCAGCAGCACTAACTTTTATTTTATCCCCCCCCCCCATTACTTTTTTAT
TTTCGATGGTTGTTGTGGGGCCCCCCCTTCTTTTATCTATCAATTGTTTT
TCCTACGCACTGCTTTAGTAAGTATTTACTCTATATAAATCTTATCTTCT
CTCCCAATACCTAAAATAGCGTAACATATATTATTTTGCTCAATTTATTT
CCACACTATTATGCTATTTTATATTAATACTAACACACTTTTGAATGATT
ATTTAATATATCACATTTATCCCTCCTATGTTTCTGTGCTTTATTTATAG
ATCTTAATATTTAACACCATTTTTGTGATTTTTTTTTTTTTTTTATTCGC
AAAACATAAATATATTTTATACGCCCTTGAATAATATCTACTTATATATT
TATAAATATTTCAAATAAAATAATACCACTTATTGTTCA

Query= MSMg01no328_k09.b1 MSMg01no328_k09.b1 CHROMAT_FILE:
MSMg01no328_k09.b1 PHD_FILE: MSMg01no328_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:51 2005
         (249 letters)



>mm_chr7_125087344_125087992
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatggtggggtttgctgtcgaaaaaatatgccttgatgtttattttcaagcaggatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatggtggggtttgctgtcgaaaaaatatgccttgatgtttattttcaagcaggatgt 260

                                                                       
Query: 61  ccattcctcagctcataatgcagtatctggaaccatgcctgcccataatgatgctggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccattcctcagctcataatgcagtatctggaaccatgcctgcccataatgatgctggata 320

                                                                       
Query: 121 tattcacagcgtgaagccagtcactgtggctggaaaggtagctatctttgtcttctctga 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattcacatcgtgaagccagtcactgtggctggaaaggtagctatctttgtcttctctga 380

                                                                       
Query: 181 accttattctatacatttctaggagcgttccactgcctagtcacaatgttcagacccgtc 240
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 accttattccatacatttctaggagcgttccaccgcctagtcacaatgttcagacccgtc 440

                    
Query: 241 atgagcaca 249
           |||||||||
Sbjct: 441 atgagcaca 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no328_k09.g1 MSMg01no328_k09.g1 CHROMAT_FILE:
MSMg01no328_k09.g1 PHD_FILE: MSMg01no328_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:51 2005
         (245 letters)



>mm_chr7_125136086_125136730
          Length = 645

 Score =  429 bits (222), Expect = e-125
 Identities = 237/242 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcaactttccttcaagatggactgtgagctgtaacataatcttgatcttcaggttgct 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 529 cctcaactttccttcaagatggactgtgagctgtagtataatcttgatcttcaggttgct 470

                                                                       
Query: 61  tttggtcttggtgttttatcacagcaaatcaaaacaaagggtcttattacaacactgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tttggtcttggtgttttatcacagcaaatcaaaacaaagggtcttattacaacactgaag 410

                                                                       
Query: 121 agtacggccaactcttggtgacaagtgatccagtagattgtatagggcgtttctctgaag 180
           |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 409 agtaaggccaactcttggtgacaagtgatccagtagattgtatagggagtttctctgaag 350

                                                                       
Query: 181 cctgactcgggatcaagtcactaaatctctctgggtttatgctgttcttctctgttgtat 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ccagactcgggatcaagtcactaaatctctctgggtttatgctgttcttctctgttgtat 290

             
Query: 241 tg 242
           ||
Sbjct: 289 tg 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)