BAC Information

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BAC

Clone NameMSMg01-329A15
Chromosome7 (Build37)
Map Location 62,510,455 - 62,510,875
singlet/doubletsinglet
Overlap geneLuzp2
Upstream geneMrps33p, LOC622146
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329A15.T7 (MSMg01no329_a15.b1)MSMg01-329A15.TJ (MSMg01no329_a15.g1)
ACCAG445978AG445979
length755735
length of high quality
(start - end)
371 (49 - 419)421 (80 - 500)
definitionCHROMAT_FILE: MSMg01no329_a15.b1 PHD_FILE: MSMg01no329_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:21 2005CHROMAT_FILE: MSMg01no329_a15.g1 PHD_FILE: MSMg01no329_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTTGTGATTGCGTTACCTCACTCAGGATGATGCCCTCCAGG
TCCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGA
GTAGTACTCCATTGTGTAGATGTACCATATTTTCTGTATCCATTCCTCTG
TTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAATGCT
GCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGGGCATCTTC
TGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCGGTAGTACTATGT
CCAATTTTCTGAGGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGC
CTGCACTCCCACCAACAATGCACCACCGTTCCTCTTTCTCCACATCCTCG
CCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGACATTCTGACTGGTG
TGAGGTGCAATCCTACGTTTGTCTCTGATTCGCCTTCCCCTGCAGCTTAA
CATTGCTTGTTTCTTCTTCCAGTTGCTATCTTTGTCTTACATTTTCCTTC
CTATTTACTCTTATTTTTTTACTTTCTTCACCTCTCTTTTTTTCTACTTC
TTATTCTCCCTTTTTCTCTTCCTTTATATTTCCTACTACTCCTTAACTTT
TACCATCACTATCTTACATTTCCTAACTATTATCTTCCCTCTTATTCCTC
CCTTC
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGTGCATGGTACCAATAA
TAAGTTAAAGCTTAATATTAGAATTGGCATTGTGAGAACATAATACTTAC
ATAGCACATTTCTTTTTCCTGAAGGAAATTTACAGGGGTAGAAGGAAGGG
CAGTATGTAGTACTGAAGTTTGTGAGAAAGAGTAGATGAGAGTGTACGTG
TAGGCTATTTTCCCCATGTAAAATGTACCAAGCACAGTTATAATATTTAA
TGTTTATCATAGAAATCCATTAGCTAATCATGTGTGGTGCTTGAAGCCTA
GAATCTCAGGACTTCTGGGCTGAAACAGGAGGATTATTGTGAGTTTGCTG
TTATTCTGGCCTACATGGCGAACTCTAATTCAGCAGGGGATATGTAGGGA
AATCATGTTTCAAAAAAAGAAAAAACGACATGGGGACACATTTTTAATAA
TTAATGAAAAAGAATACCACATAAGGATTGTATAAAAATATGGAAGTTTA
TTCAATAATAGCAAAAATGAAAGAAAATGATAAAACCTTAGAATACTTAC
ATTTGCCAAATATTTACGACTAAAATTTGACGAGAAATTTCTATTTGATA
ATTGCACCAGAAGTGAATTACCAAGGTACTTTGACCTTCACTAAGACCTT
TGGTACAAGTGTCGTTAATGGCCCAAATATNTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_a15.g1 MSMg01no329_a15.g1 CHROMAT_FILE:
MSMg01no329_a15.g1 PHD_FILE: MSMg01no329_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:21 2005
         (421 letters)



>mm_chr7_62510424_62511244
          Length = 821

 Score =  739 bits (382), Expect = 0.0
 Identities = 412/422 (97%), Gaps = 2/422 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggtgcatggtaccaataataagttaaagcttaatattagaattggcattgtgagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttgggtgcatggtaccaataataagttaaagcttaatattagaattggcattgtgagaac 393

                                                                       
Query: 61  ataatacttacatagcacatttctttttcctgaaggaaatttacaggggtagaaggaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ataatacttacatagcacatttctttttcctgaaggaaatttacaggggtagaaggaagg 333

                                                                       
Query: 121 gcagtatgtagtactgaagtttgtgagaaagagtagatgagagtgtacgtgtaggctatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 332 gcagtatgtagtactgaagtttgtgagaaagagtagatgagagtgtacgtgtaggctgtt 273

                                                                       
Query: 181 ttccccatgtaaaatgtaccaagcacagttataatatttaatgtttatcatagaaatcca 240
           ||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||
Sbjct: 272 ttccctatgtaaaatgtaccaagcatgggtataatatttaatgtttatcatagaaatcca 213

                                                                       
Query: 241 ttagctaatcatgtgtggtgcttgaagcctagaatctcaggacttctgggctgaaacagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ttagctaatcatgtgtggtgcttgaagcctagaatctcaggacttctgggctgaaacagg 153

                                                                       
Query: 301 aggattattgtgagtttgctgttattctggcctacatggcgaactctaattcagcagggg 360
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 152 aggattattgtgagtttgctgttattctggcctacatggtgaattctaattcagcagggg 93

                                                                       
Query: 361 atatgtagggaaatcatgtttcaaaaaaagaaaaaac-gacatggggacacatttttaat 419
           |||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||
Sbjct: 92  atatgtagggaaatcatgtttcaaaaaaagaaaaaactaac-tggggacacatttttaat 34

             
Query: 420 aa 421
           ||
Sbjct: 33  aa 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)