BAC Information

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BAC

Clone NameMSMg01-329C13
Chromosome7 (Build37)
Map Location 70,892,552 - 70,892,995
singlet/doubletsinglet
Overlap geneOtud7a
Upstream geneLOC384631, LOC622243, EG622251, Chrna7, LOC545971, LOC100041386
Downstream geneLOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329C13.T7 (MSMg01no329_c13.b1)MSMg01-329C13.TJ (MSMg01no329_c13.g1)
ACCAG446066AG446067
length719721
length of high quality
(start - end)
524 (50 - 573)446 (78 - 523)
definitionCHROMAT_FILE: MSMg01no329_c13.b1 PHD_FILE: MSMg01no329_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:31 2005CHROMAT_FILE: MSMg01no329_c13.g1 PHD_FILE: MSMg01no329_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTCAGGAGTTCATCTGCATCCTCTTTGAAATCATTGACCC
TATTTAAAATATTCCCTTTAAATTCCTTGTCTGACTATTGCATATGCCAG
AAAGATTTTGCTGAAGGGACCCTGTTATAGCTGTCTCATATGAGGCTATG
CCAGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTAATCTATAAGATG
GAACACAGGGCCCCCAGTGGAGAAGCTAGAGAAAGCACCCAAGGAGCTAA
AGGGGTCTGCAACCCTATAGGAGGAACAGCAATATGAACTAACCAGTACC
CCCGGAGCTCGCATCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTCG
GCCATCACTGGGAAGAGAGGCCCCTTGGTATTGCAAACTGTATATGCCCC
AGTACAGGGGAATGCCAGGGCCAAAAAGTGGGAGTGAGTGGGTATGGGAG
CAGGGCAGGGGGAGGGCATAGGGGACTTTCGGGATAGCATTTGAAATGTA
TATAAAGAAAATATCTAATAAAAAATAAATAGAAAAAAAGAAACACACTA
TCATTAATGATGCCATACTTAATATATTTTAATATAGCCAAAACCTGTAA
ATATAGCAGAACCTGTTGTATGTTAATCATTACCCATGAAATGATTGCCC
AGTTCTAACCGGATACCTC
NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTATGGGAACGAGAGTGAGC
TGGGGCTGGGGACGTGCTCTACCACGCTAACAACCATAAAGGAGAAAGGG
CAAACATGGTTTTGCTGGACACTTGGCCACCCTTGTCTTAGTAGCTGACA
TCTGCCAGTCCATTGGTGTGTGCCCTATCCTAAGTCCCACTGGCCCAGAA
ACACAACATAAGCCTGGAGAGATGCCAGCAGCTGTCAACTATGTGGAGTA
AACTGGCCGTGGGCTTAGAAAGGTGGGAGGATAGGAGTGTGCCCAGTTGC
CAGCCTCTCCTTCAAGCCCTACCCATCCTCTCCTGAGCTACACAGCAGGT
GCAGACACCCAAATGCTTCACCACCCTTCCTGAGGGATCCGTGCTGCTGC
TCTCTGAAGACCCTGGTTGCTGTGTCCAGGTATCTGGTGGATAGAACATT
TGGCCAGCATCATTCAACTGAGACATGCTCGGAGTGACCCCTATGCAGGG
ACAAGTGGCACCACCTGCTCTTAGGAGCCAGGAGCTCAGGACTGTCTTTA
GGGCTGAACACTCCCTTTATCTGAGGGCATCTTTTACGCCTTAGATCCCT
TCTTTCCGGTATGGTTTCTCCATGCCCCCCTTTTGTATCTTTTGTGGTTC
TACCCCTCCACACATTTAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_c13.g1 MSMg01no329_c13.g1 CHROMAT_FILE:
MSMg01no329_c13.g1 PHD_FILE: MSMg01no329_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:31 2005
         (446 letters)



>mm_chr7_70892352_70893196
          Length = 845

 Score =  830 bits (429), Expect = 0.0
 Identities = 441/445 (99%), Gaps = 1/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttatgggaacgagagtgagctggggctggggacgtgctctaccacgctaacaaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aggttatgggaacgagagtgagctggggctggggacgtgctctaccacgctaacaaccat 585

                                                                       
Query: 61  aaaggagaaagggcaaacatggttttgctggacacttggccacccttgtcttagtagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaaggagaaagggcaaacatggttttgctggacacttggccacccttgtcttagtagctg 525

                                                                       
Query: 121 acatctgccagtccattggtgtgtgccctatcctaagtcccactggcccagaaacacaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 acatctgccagtccattggtgtgtgccctatcctaagtcccactggcccagaaacacaac 465

                                                                       
Query: 181 ataagcctggagagatgccagcagctgtcaactatgtggagtaaactggccgtgggctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 464 ataagcctggagagatgccagcagctgtcaactatgtggagtaaactggccatgggctta 405

                                                                       
Query: 241 gaaaggtgggaggataggagtgtgcccagttgccagcctctccttcaagccctacccatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaaaggtgggaggataggagtgtgcccagttgccagcctctccttcaagccctacccatc 345

                                                                       
Query: 301 ctctcctgagctacacagcaggtgcagacacccaaatgcttcaccacccttcctgaggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 344 ctctcctgagctacacagcaggtgcagacacccaaatgcttcaccaggcttcctgaggga 285

                                                                       
Query: 361 tccgtgctgctgctctctgaagaccctggttgctgtgtccaggtatctggtggatagaac 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 284 tccgtgctgctgctctctgaagaccctggttgctgtgt-caggtatctggtggatagaac 226

                                    
Query: 421 atttggccagcatcattcaactgag 445
           |||||||||||||||||||||||||
Sbjct: 225 atttggccagcatcattcaactgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 845
Length adjustment: 10
Effective length of query: 436
Effective length of database: 835
Effective search space:   364060
Effective search space used:   364060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)