BAC Information

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BAC

Clone NameMSMg01-329E17
Chromosome7 (Build37)
Map Location 68,341,043 - 68,341,585
singlet/doubletsinglet
Overlap geneD0Kist2
Upstream geneLOC100041201, LOC100041211, LOC664896, LOC100041229, LOC625287, LOC100041248
Downstream geneLOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329E17.T7 (MSMg01no329_e17.b1)MSMg01-329E17.TJ (MSMg01no329_e17.g1)
ACCAG446166AG446167
length705703
length of high quality
(start - end)
547 (55 - 601)341 (83 - 423)
definitionCHROMAT_FILE: MSMg01no329_e17.b1 PHD_FILE: MSMg01no329_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:41 2005CHROMAT_FILE: MSMg01no329_e17.g1 PHD_FILE: MSMg01no329_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTGCCGTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCAAACAACCCCAATTGTTGCCAAAATTATTGGTTCC
TCTTCCCAAACTGACAGCATGTTCCCATTGTTGATGACAGTGCTTAGAAA
TTTTATTAAAATGAACATGTCAAGTCAGTGTTTTCATAGTCCTCAAACTG
CTACATTCCAGGGTTTTTCATAATGTACTAGATCCTTCCCACATATAGTA
TAACTTCCAAATAACGGAATTTATGGGCTGGTTGAGTGTAAAACTAAGTG
GGTTTCTTATTACTGTGTTTTGTGTTTGGTTCAGATCTTTCTGTGAATTT
TTCTTGGCCCAATGTTATTATCATAATTGTAGTATTATTTTTAAATTAAT
CTCTTATTGGTGACTACCTGATTCAATGACTTATGTTCCTGAATGAAAAA
CACACAACCTTTATATTTGATATGAATTTAATAGCACAGTAGCTAAGTAA
CTGCCTAACTTCTTTGCTGTTAGAATCTACATCCCACACATAACTCTGGG
TTACTACTTACTAATTTCGTTCTTCTATTTTGGCTGCTCTTTATTTAATG
GAGCAGCAATCCAGGCCATGTTCTTCGGGATAATTTACATGGTAGCTCTG
CTTTTCTCTCCCGCACATTCCCCAAGCAATTCATCTCTCTGTCCTTCCTC
TTCAT
NAAAACCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTT
TTATCATGAATGGGTGTTGGATCTTGTCAAATCCTTTTACTGCATCTAAC
GAGATGATCATGTGGCTTTTGTCTTTGAGTTTGTTTATATAGTGGATTAC
ATTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAAC
CTACTTGGTCAGGATGGATGATTGCGTTAATGTGTTCTTGGATTCGGTTA
GCGAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGGGAAATTGG
TCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGATATCAGCG
TAATAGTGGCTTCATAAAATGAGTCCCCCCACAGTACCTTCTACTTCTAT
CTTGTGAAGAAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGCCT
GATAGAACTCTGCACTAAACCTGTCTGCTCCTGGGCGTTTTTTGACTGGC
AAACTATTCATAAACTGCTTCCATTTCTTTAGCCGTCTTGGTATTGTCTA
TAATCCATTTTATTTCCCATTTTTTTTTGTTTCTTTCCTTTTTCCCCACA
TTTTTCTTTTCCTCCATATTCTTTCCTTTTCTTCATCTTTCCCTTCTTTT
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_e17.b1 MSMg01no329_e17.b1 CHROMAT_FILE:
MSMg01no329_e17.b1 PHD_FILE: MSMg01no329_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:41 2005
         (547 letters)



>mm_chr7_68340839_68341785
          Length = 947

 Score = 1011 bits (523), Expect = 0.0
 Identities = 538/543 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaacaaccccaattgttgccaaaattattggttcctcttcccaaactgacagc 64
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaacaacccaaattgttgccaaaactattggttcctcttcccaaactgacagc 264

                                                                       
Query: 65  atgttcccattgttgatgacagtgcttagaaattttattaaaatgaacatgtcaagtcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgttcccattgttgatgacagtgcttagaaattttattaaaatgaacatgtcaagtcag 324

                                                                       
Query: 125 tgttttcatagtcctcaaactgctacattccagggtttttcataatgtactagatccttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttttcatagtcctcaaactgctacattccagggtttttcataatgtactagatccttc 384

                                                                       
Query: 185 ccacatatagtataacttccaaataacggaatttatgggctggttgagtgtaaaactaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacatatagtataacttccaaataacggaatttatgggctggttgagtgtaaaactaag 444

                                                                       
Query: 245 tgggtttcttattactgtgttttgtgtttggttcagatctttctgtgaatttttcttggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggtttcttattactgtgttttgtgtttggttcagatctttctgtgaatttttcttggc 504

                                                                       
Query: 305 ccaatgttattatcataattgtagtattatttttaaattaatctcttattggtgactacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaatgttattatcataattgtagtattatttttaaattaatctcttattggtgactacc 564

                                                                       
Query: 365 tgattcaatgacttatgttcctgaatgaaaaacacacaacctttatatttgatatgaatt 424
           ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 tgattcaatgatttatgttcctgaatgaaaaacacacaacctttatatttaatatgaatt 624

                                                                       
Query: 425 taatagcacagtagctaagtaactgcctaacttctttgctgttagaatctacatcccaca 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taatagcacaatagctaagtaactgcctaacttctttgctgttagaatctacatcccaca 684

                                                                       
Query: 485 cataactctgggttactacttactaatttcgttcttctattttggctgctctttatttaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cataactctgggttactacttactaatttcgttcttctattttggctgctctttatttaa 744

              
Query: 545 tgg 547
           |||
Sbjct: 745 tgg 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)