BAC Information

Click to search

BAC

Clone NameMSMg01-329K10
Chromosome7 (Build37)
Map Location 105,841,262 - 106,031,846
singlet/doubletdoublet
Overlap geneLOC100040769, Prkrir, Wnt11, LOC666978
Upstream geneLOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik
Downstream geneUvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329K10.T7 (MSMg01no329_k10.b1)MSMg01-329K10.TJ (MSMg01no329_k10.g1)
ACCAG446421AG446422
length763786
length of high quality
(start - end)
345 (45 - 389)303 (77 - 379)
definitionCHROMAT_FILE: MSMg01no329_k10.b1 PHD_FILE: MSMg01no329_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:11 2005CHROMAT_FILE: MSMg01no329_k10.g1 PHD_FILE: MSMg01no329_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,031,505 - 106,031,846)(105,841,262 - 105,841,564)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACACTATCCACCAGGCTGGCCCCAACTCACAATGTAGAGCAGGCTG
GCCTGGAACTCACAGAGATCTGGCTGTCTCTGCTTCTGAAATCCACCATC
AAAGGTGTGGCCACCACTCTCAGTACTCACTTTCCAACCAAGCACCACTT
GAAGGAATTCACCATTCAACAGGGACTTTGGAGAAGTCACTGAGTGAGAG
ATTCGGGCAAACATTGACGCAGGCATCTGCAAAATGCAGCTCTGCACAGA
TGTGCTGAGGGGCCTACCTACCTTGCCTCTGGTTCCTGGTGGGACCTCTC
CAGATGAGTTTCTCTGTCCCTCAAGTCGTAAATGTCCTTCATGTCATTCT
CTGACACTCCCCCCCCTGCCGAATTGCTATTTATAGCTGACGATTTTCAC
GTTACATATTTTTTTCCTTTTCACCTTGTATCATATCTCCCCCCAGTTTT
GTAGTTTCTCCATTCACCCTTGCTCATCTTATATTGTTTATCCCTTCGTC
CGCCCTCTTTTTTTTTTCCCTTCCTTTTTACCTTTTATCCCCCATGACTT
TCCCTTTTCCCTACTTATTTCTCATTCTTCTCCCTATTTCACCCTTTCCT
CCCCCTCCTTCCCTTTTTTTTTTTTTTCTTTTCCCCCTATTTTTTATCAT
ATTTCCTTTTGCACCTTTTCCATTTTCAAACCCTCCTATACTATCTATCT
TACTACTACGTAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGAGGATTATTAGAAGGCCTC
CAATCTCCTCCCGGAAGGCAGAGAAGTGTGACATGATGGGGACCCCAGGG
AGGAGACCAGGAGGACTTGATGCTAGAAAATGTTAATCTAGAACGTATCA
TCCGTCGCCTCCATCCTGTCCCCTGACTCATACTCTGCTCTCCACTCCGC
CCTGTCTGGAGGCCCTAAGACATGGAACTCGTCATTTCCTGCCGGGGTAA
ATCACAGACTGACGTGTGATACTCGTTCTTAGTTTTTACCATACCCCAGG
TATAGATGCTCACATCCATCAGGGTGGAGTGAGGTCTTTCCACAGGGTGT
TGTTGGGATTCCCCCCCTTTTTTTTTTTTTCTTTCTCTTTTTACCTTCCC
CTCCCTTTTTTTATCCCCCTTTTTCTCTTCCCTTTCTCCTCCCCTTCCTT
TCCTTCTCTCCCTTTTTTTACCCCCCCCTTTTTCCCTTTTCCCCTTTCCT
ATTTTTTTTCCTTCTCCCTCCTTCCATTTTTCATTCCTTTTCACCCCTTT
CCCTCCCCCTTTTCCTCCTTTTTTTTCTTCCCTCCTCCTTTTTTCATACT
CCTTTTTTCTTCTTTTTTTTTCCTTTTTTCTCCCCCCTCTCTTCTTTCCT
CTTTCCCCTCCTCTTACCTCCCTTTCCATCCACCTCCATTATCCCCCCTC
CCATTCCATTTTTTTTTCTCCCTCCCCCCTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_k10.b1 MSMg01no329_k10.b1 CHROMAT_FILE:
MSMg01no329_k10.b1 PHD_FILE: MSMg01no329_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:11 2005
         (345 letters)



>mm_chr7_106031176_106031920
          Length = 745

 Score =  630 bits (326), Expect = 0.0
 Identities = 338/342 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacactatccaccaggctggccccaactcacaatgtagagcaggctggcctgga 63
           |||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ggaattcacactgtagaccaggctggccccaactcacaatgtagagcaggctggcctgga 612

                                                                       
Query: 64  actcacagagatctggctgtctctgcttctgaaatccaccatcaaaggtgtggccaccac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 actcacagagatctggctgtctctgcttctgaaatccaccatcaaaggtgtggccaccac 552

                                                                       
Query: 124 tctcagtactcactttccaaccaagcaccacttgaaggaattcaccattcaacagggact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tctcagtactcactttccaaccaagcaccacttgaaggaattcaccattcaacagggact 492

                                                                       
Query: 184 ttggagaagtcactgagtgagagattcgggcaaacattgacgcaggcatctgcaaaatgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttggagaagtcactgagtgagagattcgggcaaacattgacgcaggcatctgcaaaatgc 432

                                                                       
Query: 244 agctctgcacagatgtgctgaggggcctacctaccttgcctctggttcctggtgggacct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agctctgcacagatgtgctgaggggcctacctaccttgcctctggttcctggtgggacct 372

                                                     
Query: 304 ctccagatgagtttctctgtccctcaagtcgtaaatgtcctt 345
           ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 371 ctccagatgagtttctctgtccctcaagtcgcaaatgtcctt 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no329_k10.g1 MSMg01no329_k10.g1 CHROMAT_FILE:
MSMg01no329_k10.g1 PHD_FILE: MSMg01no329_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:11 2005
         (303 letters)



>mm_chr7_105841062_105841764
          Length = 703

 Score =  586 bits (303), Expect = e-172
 Identities = 303/303 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtgaggattattagaaggcctccaatctcctcccggaaggcagagaagtgtgacatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtgaggattattagaaggcctccaatctcctcccggaaggcagagaagtgtgacatga 260

                                                                       
Query: 61  tggggaccccagggaggagaccaggaggacttgatgctagaaaatgttaatctagaacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggaccccagggaggagaccaggaggacttgatgctagaaaatgttaatctagaacgt 320

                                                                       
Query: 121 atcatccgtcgcctccatcctgtcccctgactcatactctgctctccactccgccctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcatccgtcgcctccatcctgtcccctgactcatactctgctctccactccgccctgtc 380

                                                                       
Query: 181 tggaggccctaagacatggaactcgtcatttcctgccggggtaaatcacagactgacgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaggccctaagacatggaactcgtcatttcctgccggggtaaatcacagactgacgtg 440

                                                                       
Query: 241 tgatactcgttcttagtttttaccataccccaggtatagatgctcacatccatcagggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatactcgttcttagtttttaccataccccaggtatagatgctcacatccatcagggtg 500

              
Query: 301 gag 303
           |||
Sbjct: 501 gag 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)