BAC Information

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BAC

Clone NameMSMg01-330C07
Chromosome7 (Build37)
Map Location 111,127,048 - 111,127,339
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614
Downstream geneOlfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330C07.T7 (MSMg01no330_c07.b1)MSMg01-330C07.TJ (MSMg01no330_c07.g1)
ACCAG446778AG446779
length750755
length of high quality
(start - end)		294 (71 - 364)292 (78 - 369)
definitionCHROMAT_FILE: MSMg01no330_c07.b1 PHD_FILE: MSMg01no330_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:48 2005CHROMAT_FILE: MSMg01no330_c07.g1 PHD_FILE: MSMg01no330_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGCACTAATTTCCCTCTGGTCCTGAGCTTCTTTTGGCTGGGAGACTTTT
AATGGCTGCTTCTATTTCTGTCCCAGTTATGGGACAACAAGATAGATAAA
CCCTTAGCCAGACTAACCATAGGGCACAGAGACAGTACCCAAATTAATAA
AATCATAAATGAAAAGGGAGACATAACAAAAAAGTCTTAAAATAATTATT
CTGTTTGTTGAATATTAACAGTTGAAAATGTTATAATCATGGCTTACAAA
CATGGAAATATTTTTGATAACTTTTCTAACTGTGCTTAAAATTAGCATTT
TTTGAATGTTTAACTTCTATGAGCCCCCCGCCACCTTAAAAATTTTAAAA
TATACTTACTGATAAAATAATTTGCCCCCTAAAAACACAGATAATCTTTT
TTAAATAAACTGATTGTTAGACAATGTACAAAGATATATAAAGTGTTTTA
AATACTCTCTCACTATGTCAGGAGGTATTATATAAGGGCTTTTGACTATC
TTTCTTAATGATTCATTTTTAATATTTTATACATTTTTACTATGCTTAAT
TCCCAAAGAATATTTTGTATGTTTTGAAACAATTTAGTATTCAACATCAG
ATATAGGATCCTCAGTTATGAATAGCATTAAATATTCCTTAATTTTATTT
GTAGGGTATGAAAGGATATGGATATAAAAGTTGAACAAATATTTATGTGT


ACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTGTCTCATTGGACCTACTA
TTCATCTATGAGCCACTCCTTATGGACTGCACCTACGGATATTAAACTCT
TGGTATACCAAACAAACCTATGCTATTGCCCCCAGAATTCTGTCCTATTC
CTGTCCTCTGTAAGAGGATAATTGTCAATATAGTCCACATAATTACAGAA
GCAAGATACCTGAAAATAATCATGGTACTTTCCGATTTAAACACTATTTC
ATCTGAGTAAATGTCACAGAGTGCTAAGCAAATCACCTTTCTGTGATATT
GGCCAGGTAGAAAAACTTTTNNCTANTTTCCCTATCAGACCCCATTTCTA
ATAAGATTAATTTCAGCTAGTAAAAATGTAAGAGTAAAAACAAAAACACA
GATACGAGAGTTATCAAAGAAATTCTAACAAAAGAAATGTATTTTAAACA
TATTAATACATAGCTGAAAGAATGTAAGTAGAAAATAATGAGTTTGTCCT
GAATAGAAATCTATAGGAGAATAATACTTACTGTTCAGCTTCTGACTACT
GAATAAATCTGTATTACATTTTTCAAGGGCAATCTGTCATATATACTTCT
TGACTCTAATGATTGAGTGAACAATGATACCATACTGATGCTGTTTTTAA
TGTAGATTTCAGATTCTGTATGTTGCATCCATCAAGTATGTCATAAATAA
CAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_c07.g1 MSMg01no330_c07.g1 CHROMAT_FILE:
MSMg01no330_c07.g1 PHD_FILE: MSMg01no330_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:48 2005
         (292 letters)



>mm_chr7_111126848_111127539
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctgtctcattggacctactattcatctatgagccactccttatggactgcacctacg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tccctgtctcattggacctactattcatctatgagccactccttatggactgtacctacg 260

                                                                       
Query: 61  gatattaaactcttggtataccaaacaaacctatgctattgcccccagaattctgtccta 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatattaaattcttggtataccaaacaaacctatgctattgcccccagaattctgtccta 320

                                                                       
Query: 121 ttcctgtcctctgtaagaggataattgtcaatatagtccacataattacagaagcaagat 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctgtgctctgtaagaggataattgtcaatatagtccacataattacagaagcaagat 380

                                                                       
Query: 181 acctgaaaataatcatggtactttccgatttaaacactatttcatctgagtaaatgtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctgaaaataatcatggtactttccgatttaaacactatttcatctgagtaaatgtcac 440

                                                               
Query: 241 agagtgctaagcaaatcacctttctgtgatattggccaggtagaaaaacttt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagtgctaagcaaatcacctttctgtgatattggccaggtagaaaaacttt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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