BAC Information

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BAC

Clone NameMSMg01-330E04
Chromosome7 (Build37)
Map Location 91,110,517 - 91,110,800
singlet/doubletsinglet
Overlap gene9930013L23Rik
Upstream geneLOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2
Downstream gene2210412D01Rik, Arnt2, LOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330E04.T7 (MSMg01no330_e04.b1)MSMg01-330E04.TJ (MSMg01no330_e04.g1)
ACCAG446865AG446866
length721743
length of high quality
(start - end)
284 (75 - 358)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no330_e04.b1 PHD_FILE: MSMg01no330_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:56 2005CHROMAT_FILE: MSMg01no330_e04.g1 PHD_FILE: MSMg01no330_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTATCCTCAAGAACCCAGTTTTTAATGGGGTTATTTGATT
TTATGGAGTCCATCTTTTTGAGCTCTTTTTATATATTGGATATTAGTCCC
CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGATATCTTTTGCCTTGCAGAAGCTTTGCAATTTTA
TGAGGTCCCACTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGATGCTTTTCCCTAC
TTACTCCTCTANATGNTTCCCCGCCCCTCCCTCTATGTGGAGTTGCTTAA
TCCACTTAGATTTGACCTTAAAACAAAGAAACAGAAATGGATCAGTTCGC
AATCTTCTACATGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAAT
GCTGCCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGT
GTGTTGGTTTCTCTCTGGCTCCTCATTTCTGTTCCATTGGTCTACTTGTC
TGCCACTATACCAGCACCATGCAGCTTTTTATCACAGTGGCTCTGTAGCC
CCGCTTTATGTCGCTCATGGCGATTCCACCATAGGTTCTCTTTATTCTTT
GATAATAGGTTTTTGTTACCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCCGCGAAATTCCAAAATCGAATGTTATATAGCCTT
CCTTAGAGATCTGGATGCTGAGCCCCAGAAAGAACAAGAGACTGGGTCAG
GGTCAAGGCCTCAAGCAAAATGAGCAGCTGGGGAGAAGTGGGTTAGATCA
AGGCTATTGGAGTAGAACATGATGCTTGTTGCCTATCTGCCACCACCCAG
CTATATGGGGCTTTGGACACACTAGGTCTCCCATCTTAGCTTCCACCCTA
GTCCACGCTTTATGTTAGAATCACTTGGTGATAGCTTATAGCACTGACGT
ACCAGGCACCATTTTTTTTTCCCCTCGCCCCACTCTCTAACAAATGACTG
TACATAAATTTCGTAGTACTCTGGTATGAAATATCCCCCACAGGTTCTTG
TGTTTGAACACTTGGTCTACAGGTAGTGAACCTGCTTTTGGAGGTCGCGA
AATCTTTAGGAGAGGAACACCATTATGTTATATGCCCGCCATTGCGACGC
GGTTTTTGAGTATTATACACCCTGTTTTCTACCTCTCCGCCTTCTCTGTT
CTTCTACAAATTTTTTTTACTTCTAACCGCTCCACGTTTTATGATCCTTT
TGTGTTTCTCTGCATTGCCTGTTCTAAACCCCGCTCTGCCACGGCTATTC
TTTTGAACCCTTTCACGCAATCTCTTATGTATCTTCTTGCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_e04.g1 MSMg01no330_e04.g1 CHROMAT_FILE:
MSMg01no330_e04.g1 PHD_FILE: MSMg01no330_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:56 2005
         (284 letters)



>mm_chr7_91110317_91111000
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaatcgaatgttatatagccttccttagagatctggatgctgagccccagaaagaaca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 caaaatcgaatgttatatagccttccttagagatctggatgctgaggcccagaaagaaca 260

                                                                       
Query: 61  agagactgggtcagggtcaaggcctcaagcaaaatgagcagctggggagaagtgggttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagactgggtcagggtcaaggcctcaagcaaaatgagcagctggggagaagtgggttag 320

                                                                       
Query: 121 atcaaggctattggagtagaacatgatgcttgttgcctatctgccaccacccagctatat 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaaggctgttggagtagaacatgatgcttgttgcctatctgccaccacccagctatat 380

                                                                       
Query: 181 ggggctttggacacactaggtctcccatcttagcttccaccctagtccacgctttatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggctttggacacactaggtctcccatcttagcttccaccctagtccacgctttatgtt 440

                                                       
Query: 241 agaatcacttggtgatagcttatagcactgacgtaccaggcacc 284
           ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agactcacttggtgatagcttatagcactgacgtaccaggcacc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)