BAC Information

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BAC

Clone NameMSMg01-330E24
Chromosome7 (Build37)
Map Location 120,603,404 - 120,603,694
singlet/doubletsinglet
Overlap genenone
Upstream geneParva, LOC627808, Tead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736
Downstream geneMlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330E24.T7 (MSMg01no330_e24.b1)MSMg01-330E24.TJ (MSMg01no330_e24.g1)
ACCAG446905AG446906
length751752
length of high quality
(start - end)
321 (46 - 366)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no330_e24.b1 PHD_FILE: MSMg01no330_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:00 2005CHROMAT_FILE: MSMg01no330_e24.g1 PHD_FILE: MSMg01no330_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGCAGAGGCTGTGGAAGAACACTGCTTACTGGCTCACTCTTCGT
GGCTTTCTTAGCTACCTGATATAATCCAGGACCACCGACCAAGGGTGGAA
CCATCCACAGTGGCCTGGGCCCTCCTACATCAAGCATTAGCCAAGAAAAT
AGCCCATGGCCATGCCCACAGGCCTCTCTGCTAGTGGCAATTCTTTCTTC
CTAGATCTCTCTCTGCTTTGTATTAAGATGAAAGGGTAAAGAAAAATGCA
ATATTTATATTTATAAAATGAAATATTTTATTTATAAAGAAAATAACAAA
TCATGTCATTTTAGCTTAAGTTTCGTACCAAGGCGGGNCCCATCATCAAA
TCCGCCAGTTATAGAATAATACTGTATCTAGAAAGAAAAAACACATATGC
GGAAGCTAAACTAGGTTGATCTAGAAGTAGTTACCAGAGCTTTAAAGCAT
AAGATTTGATCAGTGCTCATTGTTTCTAGGGGGAAATCCACCCCATTAAC
ATACTCATCAGCATACCTTAATATTATACAAAAAGATGGATGCTCGCTGA
CCATACTACTGATGGGCAATATAGGGCAAATCCATGAGCACCCTCACCAA
ACTGACACACTAATTTATCTTAGTTGTCAATGTCCCAAAACATTTTTGTA
ATAAACAAGTTACATGGAAGAGGCAGAGAAGCCACTGGAATGCATGCAGT
C
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAACAAAAGTCATTTGAACCTAA
CAGGACAGTTATCTGGAAGGGAAGAGAACTTCTGCCAGGCTGTTTCCCCA
GATTTCTCTGAATTCCTAAACTTTTTGAGGTATCGTTTACAAACATGCTC
TGGTCATGTACTCAGTGTCACTTCATGCCATTTTTCTCCTTCTAAAGAGA
AATAGTTTGATGGTCACTATTAGCCAGGACACTAACAATGCCACTTAGAC
TGAGCTCAGTGAAGCAGAGTGTGCTATGGAGAATTAAATGGAGCAAGATA
TAGGATTAACAACGTGGTTAATCCTTGCCCCCCCCCCCCATTTTCTAAAG
ACTAAGAGCATCGTGTCCCCAGAAAAATGTGTTTTCATATGATATGAAGA
CTGAGGTTCATTATTTCAAGCACTCAGAGCCTTTAATCCATGGTTAAGAC
CATTAGGAAAGATAGAGTGGGGGAAAACCTAGGGCTCCCATTACACCACA
TCTAGTCATCATCTGAAAAAGACTGTTTCTTACTGTAGAGATATTTGCAT
ATCTGTGCATATTGCTAATCAATTCACAATAGCTAAAAAGTGGAGTGAAC
CCAGGTGTCTATAAACTGATGAATAGATAAGACTGTGTTACATACAAAAT
GGAATTTCTTTTATCTGTAAAGAAAATTATTATGAAACTCATAGGGAAAT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_e24.g1 MSMg01no330_e24.g1 CHROMAT_FILE:
MSMg01no330_e24.g1 PHD_FILE: MSMg01no330_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:00 2005
         (293 letters)



>mm_chr7_120603204_120603896
          Length = 693

 Score =  501 bits (259), Expect = e-146
 Identities = 283/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaacaaaagtcatttgaacctaacaggacagttatctggaagggaagagaacttctgcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 201 tgaacaaaagtcatttgaacctaacaggacagttatctggaagggaagagaatttctgct 260

                                                                       
Query: 61  aggctgtttccccagatttctctgaattcctaaactttttgaggtatcgtttacaaacat 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 aggctgtttccccagatttctctgaattcctaaactttttgaggtatcttttacaaacat 320

                                                                       
Query: 121 gctctggtcatgtactcagtgtcacttcatgccatttttctccttctaaagagaaatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||
Sbjct: 321 gctctggtcatgtactcagtgtcacttcatgccatttttctccttctaaagatcaacagt 380

                                                                       
Query: 181 ttgatggtcactattagccaggacactaacaatgccacttagactgagctcagtgaagca 240
           |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatggtaactattagccaggatactaacaatgccacttagactgagctcagtgaagca 440

                                                              
Query: 241 gagtgtgctatggagaattaaatggagcaagatataggattaacaacgtgg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgtgctatggagaattaaatggagcaagatataggattaacaacgtgg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)