BAC Information

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BAC

Clone NameMSMg01-330G21
Chromosome7 (Build37)
Map Location 64,065,269 - 64,256,426
singlet/doubletdoublet
Overlap geneGabrg3
Upstream geneTubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330G21.T7 (MSMg01no330_g21.b1)MSMg01-330G21.TJ (MSMg01no330_g21.g1)
ACCAG446990AG446991
length745730
length of high quality
(start - end)
244 (75 - 318)245 (58 - 302)
definitionCHROMAT_FILE: MSMg01no330_g21.b1 PHD_FILE: MSMg01no330_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:08 2005CHROMAT_FILE: MSMg01no330_g21.g1 PHD_FILE: MSMg01no330_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,256,183 - 64,256,426)(64,065,269 - 64,065,510)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAGAGCGCGGA
ATTCTCCATGCATTGCCAAAATCCTCTGTCAGACACTCTTATAGGCTCTT
CATTACATGACAGCTTTGCCCCCCCTACTCTGGGAGAATTCTCTAGAGCC
TATTTGATTCTTCCCCATCCTCATTAGGCCTGTTTATAGACCCACCCCTT
TCATTTTTCTCTTTGGAGGTTTGAGGGAGTTGGACTGTGTTTGGCTGCCC
TTCATCCACAAAGCATTTATCTGTCTTTCTGGCCTGCATGTCTTGTATAT
GACTGATGCAATTTGTCCCTTTTTTTTCCACCATCTCTTCAGTTACTGTC
TGTGGTTTCTTAAGTTCATCCCAAAGCGTACCCTGGTAAATGGTGATGAA
CCGGATGGTGCATTTTTAGGATTAGAGAAAACAGAGAAACTGTGATGAAA
CTGTAGCTAAGGACACACACACACACACACACACACACACACACACACAC
TGATCAAAGATCACACAGACACACGCACATCTGTGTGATATGAAAAGAAG
ACTGCTGCCCCTGAAGAGTGATGCTGAAACTCAGGCCATGGAAGATTTGA
AGAAATAACACTGACAATCAATGTCAGTTATTTTCCACCCGTGATAAGAA
GAAATAGAATGTTTTTATCTAATTTTATCTACACCTTTTCAGATTATTGA
TGGTAACCATATTTGACGGCCAGGTGTCAGTGATTACTTTTTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAA
AAAAACCCATGTTGTGTAGTACCCATAGAGGACAGAAGAGATCATCAGAT
TCTCCTGGGACTGGAGTCAGAGACAGGTATGAGGTGGATGCCTCAGGTCC
TCTGGAAGTGCTCTTAACGTCTGAGCTATCTGTCTTGCCCCAAAAGAGTA
TTTCTTAAAAGGAATTTTACTGCATCATTGTTGTCTGGAAGGATGACTCT
GGCAGGAGTCAGGTAATATTAAAGGAAACTGCAGAGCTCTTTCCTTGATG
ATTTTTTGTTTAAAGGTCGCGTGGTCTTCCTACCTTTAATTGTTCAGTAA
TTTCCCTGACGNCCCCCAGAATCAGGGAAAGATGAAGAATGAACACATAT
CACTAGAGAAGAAAATTGTTACATGTCCACGTTGGACAGCACACTTTCCT
AGAATGTCAAACACAGAGCTACCTTAAAGCTCTGAAAAAGATGACTAAAT
TCAATAAATTTTATGTCTCAAGCATATTCTGAATATATGTGAAAGTTTCC
TGGGAAGCACACAATTTGGGAAACTGTTGTACTTTGTTTTTAAGCTAGAT
ATGTTTAAAGAAGTTTTGTTTTCTTAATAACTTTGCAGATCTGTGCTTCT
GCAGACTATCTTGAGAGCAATCCTTTCCATCAAGACATCTCATGATGTGA
ACCTTGCTAGTCTGGTTATATGGGAACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_g21.b1 MSMg01no330_g21.b1 CHROMAT_FILE:
MSMg01no330_g21.b1 PHD_FILE: MSMg01no330_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:08 2005
         (244 letters)



>mm_chr7_64255983_64256626
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtcagacactcttataggctcttcattacatgacagctttgccccccctactctggg 60
           ||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 444 tctgtcagacactcttacaggcacttcattacatgacagctttgcccccactactctggg 385

                                                                       
Query: 61  agaattctctagagcctatttgattcttccccatcctcattaggcctgtttatagaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaattctctagagcctatttgattcttccccatcctcattaggcctgtttatagaccca 325

                                                                       
Query: 121 cccctttcatttttctctttggaggtttgagggagttggactgtgtttggctgcccttca 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 cccctttcatttttctctttggaggtttgagggagttggaatgtgtttggctgcccttca 265

                                                                       
Query: 181 tccacaaagcatttatctgtctttctggcctgcatgtcttgtatatgactgatgcaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccacaaagcatttatctgtctttctggcctgcatgtcttgtatatgactgatgcaattt 205

               
Query: 241 gtcc 244
           ||||
Sbjct: 204 gtcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no330_g21.g1 MSMg01no330_g21.g1 CHROMAT_FILE:
MSMg01no330_g21.g1 PHD_FILE: MSMg01no330_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:08 2005
         (245 letters)



>mm_chr7_64065066_64065710
          Length = 645

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gttgtgtagtacccatagaggacagaagagatcatcagattctcctgggactggagtcag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gttgtgtagtacccatagaggacagaagagatcatcagattctcctgggactggagtcag 263

                                                                       
Query: 64  agacaggtatgaggtggatgcctcaggtcctctggaagtgctcttaacgtctgagctatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agacaggtatgaggtggatgcctcaggtcctctggaagtgctcttaacgtctgagctatc 323

                                                                       
Query: 124 tgtcttgccccaaaagagtatttcttaaaaggaattttactgcatcattgttgtctggaa 183
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttcttgccccaaaagagtatttcttaaaaggaattttactgcatcattgttgtctggaa 383

                                                                       
Query: 184 ggatgactctggcaggagtcaggtaatattaaaggaaactgcagagctctttccttgatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggatgactctggcaggagtcaggtaatattaaaggaaactgcagagctctttccttgatg 443

             
Query: 244 at 245
           ||
Sbjct: 444 at 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)