BAC Information

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BAC

Clone NameMSMg01-330P13
Chromosome7 (Build37)
Map Location 20,437,765 - 20,438,050
singlet/doubletsinglet
Overlap geneCeacam16
Upstream geneMill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3
Downstream geneCeacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330P13.T7 (MSMg01no330_p13.b1)MSMg01-330P13.TJ (MSMg01no330_p13.g1)
ACCAG447388AG447389
length728739
length of high quality
(start - end)		314 (46 - 359)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no330_p13.b1 PHD_FILE: MSMg01no330_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:48 2005CHROMAT_FILE: MSMg01no330_p13.g1 PHD_FILE: MSMg01no330_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATGTAGCCATGAGTTCTTTTAGCTAACATGTAAAAACTGTAT
TTGTACTTATGTGTATGTTTGACCGTCTGTGTCAGGGAGGTGCACATGAG
TGCAGGGGCTCACGGTGGCTAGAGTGCATGTATCAGATCCCGTGGAGCTG
GGTGTGACCCTCCTGATGTGGGAACTAGGAGTCTAACTCAGGTCCCCTGG
AAGAGTAAGAAGGACTCCTAACCACTGAGCCCTTCCTTTAATGCTTTTTT
TTCCCCTTCGAGACAGGGTTTCTCTATGTAGCCCTAGTATCTTGGAACTC
AGTCTGTAGATTTTTTGAGCCTCCAACTCACAAATCCACCTGCCTCTGCC
TCCCAAGTGCTGGGATTAAGGAGTGGATCACCACTGCCTGGCTCCTTTAA
TGTTTTTTAAACTATGTTTATTTATTTTTTGTATCTGTACTTATCTCTTC
TGTCTCTCTGTGTGTGGTTATCTCTATGTGTGTGTCTGTGTGTCTTTTTG
TCTGTGTGTGTCACTGTGTGTATGTGTGTCTTTTTGTCTGTGTGTCTGTG
TGCATTACTATGTGTCTGTGTGTGTGTTGTGTCTGTGTGCCTTTTTGCCT
GTGTGTCTGTGTGCGTCACTGTGTGCCACGTACTCCGGTCCAGTCTGCTT
GACAGGCTGAGAGGCCTGAAAGTACTCA

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAGAAATCTTCAAGACCTTGTTACT
AGGGCAGGTGCTCTGGTATGGCCCTCCCTGACGGAGAACAAGAGTCTGGG
GTCCTGCCTGTCGCATCAGACTAGACACTCAGAAGTCAAATTTCCGGAGC
CAGGACCAGTCCGGACCCAACCACCAGATGTCTGGGTTCTCACAGGCTCA
CTCCTAAGCCTGTGCGCTCGGGGATTCCTTTTCAGCCTCCTTTGTCACAG
TCCAGCTGGAGGACCAGTCTTTCTTCATGCAGCACCAGACCCCAGATCAT
GGCACAGGCTGAGTGGTTTTGCCCGCCCACCGCGGGAGGCGCGGTGGTNT
NTNNNNTTTTTTTTCCCCCCAAAAAAAAAAAAAAAAACNTTTGCGGGGGG
GGGGGCTTCTCTTTCATTAAGGTAACTCCTACGTTATCTCTCTTCTCTTT
TCTATCTCTTTTCTACTTTTTTCACTTCCAGTTTATTTGAATCCTACTTC
GTCTAATCTTTCATACCCATTTTTTTTTTCTTCCTTCGCTTTATTAATAT
TATCCTCTCTTCTTTTTTCCGTTTTTCGTTTATTTTCCTCTTTTCTATTT
TTTTTTTTTGTTTTCTTTTCTTCTCTTCTTTCCCTAGCATTCCCCTTTCA
TTGACACCCCTCCTAACTTACGCCATTTATTTCATAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_p13.g1 MSMg01no330_p13.g1 CHROMAT_FILE:
MSMg01no330_p13.g1 PHD_FILE: MSMg01no330_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:48 2005
         (289 letters)



>mm_chr7_20437565_20438250
          Length = 686

 Score =  484 bits (250), Expect = e-141
 Identities = 279/290 (96%), Gaps = 5/290 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagaaatcttcaagaccttgttactagggcaggtgctctgg-tatggccctccctgacg 59
           ||||||||||||||||||   |||||||||||||||||||||  | ||| ||||| ||||
Sbjct: 486 ccagaaatcttcaagacc---ttactagggcaggtgctctggaca-ggcgctcccagacg 431

                                                                       
Query: 60  gagaacaagagtctggggtcctgcctgtcgcatcagactagacactcagaagtcaaattt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gagaacaagagtctggggtcctgcctgtcgcatcagactagacactcagaagtcaaattt 371

                                                                       
Query: 120 ccggagccaggaccagtccggacccaaccaccagatgtctgggttctcacaggctcactc 179
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccgaagccaggaccagtccggacccaaccaccagatgtctgggttctcacaggctcactc 311

                                                                       
Query: 180 ctaagcctgtgcgctcggggattccttttcagcctcctttgtcacagtccagctggagga 239
           |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 310 ctaagcctgtgcactcggggattccttttcagcttcctttgtcacagtccagctggagga 251

                                                             
Query: 240 ccagtctttcttcatgcagcaccagaccccagatcatggcacaggctgag 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ccagtctttcttcatgcagcaccagaccccagatcatggcacaggctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 686
Length adjustment: 9
Effective length of query: 280
Effective length of database: 677
Effective search space:   189560
Effective search space used:   189560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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