BAC Information

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BAC

Clone NameMSMg01-331B17
Chromosome7 (Build37)
Map Location 36,531,301 - 36,531,673
singlet/doubletsinglet
Overlap geneDpy19l3
Upstream geneChst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5
Downstream genezfp507, LOC100043872, EG668988, LOC668507, Tshz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331B17.T7 (MSMg01no331_b17.b1)MSMg01-331B17.TJ (MSMg01no331_b17.g1)
ACCAG447489AG447490
length732743
length of high quality
(start - end)
370 (65 - 434)---
definitionCHROMAT_FILE: MSMg01no331_b17.b1 PHD_FILE: MSMg01no331_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:58 2005CHROMAT_FILE: MSMg01no331_b17.g1 PHD_FILE: MSMg01no331_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATT
CAGAGGCCTTCCTGCCTCTGCCACCTAAGTGCTAGGAATAAAGGTGTGTG
CTACTGTGTCTAGCTGCAACTAGAGTCCGCAGCCATAGCTGTTTTGGCCA
GAACTAGTTCTCAACCTGGGAGGTTTGGCCTCACTGGTGGCGAGAAGGAA
CTGTGCCCTGGAGAACTGCAAACGGCATTGTTACAGAGAATGGCTGATGT
ATCCAGCCAGACACCAAGCTGCTCACAGAATGTATCAGGTTGTCACTGAT
CTTTCTGCCCTGATTAACATATTAATGTCACCTTCCATTTAAAAAAAAAA
AAAAAGTCCTTCCAGGCCAACTTCCTAGAAAACTCTGACTACACCTTCTT
CTCTCCACCTCCTGCCCCGCTCTGAACCCCTACACAAAGGGAGTGCAAAC
TCAAGTTCCCCAAAGGCGGCAGGCACATCTACATGAATGGCTGCAGACCC
ACAGCCATCTTTGGTCTCAGAAGCCATTTGTCCCCAGCCTCTCTACTGAC
CTAGGAGACCCATCTAGTGTGTGTAACCTTTGTTGTGTACTCACTTATCT
AACAACTAGCTTCTCTCATCATTCCTATGAACGTCACCTGACCATATGTA
ACATCCACTGTTTGGTACAAGTGATAGCCACTTTTCCTCCCCCCCCCCCT
CTAGGGCCTAGTTTGCTTTCTCCTGCTGATAT
GAAGCGGGAGGCCGGGGGGGGCGGGTTACCCCACCNGNNNGAANGANAGA
AGGTTACCGNAGNNGNNAGANAANAAANAAAGNAAAAANAAAAAAAAGGG
GGGGGTTAAACCCCAAAAAANGGAANANNANNNGANGNNAGAGGGAGGAA
AAGGANGGAAAAAGGAANAGAAAGAAGGGAAAGGAGANGAGGANAGGGAA
GAANNNNGGANAAAGGAGGAGAGANNNAAAGAAAAGGGTTTTTTTTTGTT
ANATGAAAGAGAGTGAAAGNAATGATGTGTATGTTTTTTTTATANNGGAG
AAGAGTTTTTAATAGTTTTGGAANAGAAAAGGAGGGGAGGAGGGGAGNAG
ATTTTAAACCCCCCCCCCAAGAAGGGANACAGANACGGAGGACGGGCAGC
GAGGACCCCCCCCGCAAAACACAAGCGCCAGCAACCGCACAACCCGAAGC
CCCCAGAACACCAAGACCACCCCAAAAACAAAACAGCACGCCACAGAGAA
ACAGCACCCCGCGCGACCCACCACGCCAGGACACCAACCAAACAACAACA
CCCACCGCGCGCGGAAACCACACCACACCACCCCAAAGACGCCCCCCCGG
CAGCCCAAACCACCCCCCGCCGCCCACCAAAGCCCCCCCAGCCAGAAACC
CCTTTTTTTTTTTTTTTTCCCCATACTTTTATCCATCACTTTTTTCCCTC
TTCCTTTTTTCTTTCTCTCCCCCCTTTTTTTTCACTCTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_b17.b1 MSMg01no331_b17.b1 CHROMAT_FILE:
MSMg01no331_b17.b1 PHD_FILE: MSMg01no331_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:58 2005
         (370 letters)



>mm_chr7_36531101_36531873
          Length = 773

 Score =  644 bits (333), Expect = 0.0
 Identities = 362/373 (97%), Gaps = 3/373 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctgccacctaagtgctaggaataaaggtgtgtgctactgtgtctagctgcaactaga 60
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 201 cctctgccacctaagtgctaggaataaaggcgtgtgcaactgtgtctagctgcaactaga 260

                                                                       
Query: 61  gtccgcagccatagctgttttggccagaactagttctcaacctgggaggtttggcctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccgcagccatagctgttttggccagaactagttctcaacctgggaggtttggcctcac 320

                                                                       
Query: 121 tggtggcgagaaggaactgtgccctggagaactgcaaacggcattgttacagagaatggc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtggcgagaaggaactgtgtcctggagaactgcaaacggcattgttacagagaatggc 380

                                                                       
Query: 181 tgatgtatccagccagacaccaagctgctcacagaatgtatcaggttgtcactgatcttt 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgtatccagccagccaccaagctgctcacagaatgtatcaggttgtcactgatcttt 440

                                                                       
Query: 241 ctgccctgattaacatattaatgtcaccttccattta---aaaaaaaaaaaaaagtcctt 297
           |||||||||||||||||  ||||||||||||||||||   ||||||||||||||||||||
Sbjct: 441 ctgccctgattaacataaaaatgtcaccttccatttagaaaaaaaaaaaaaaaagtcctt 500

                                                                       
Query: 298 ccaggccaacttcctagaaaactctgactacaccttcttctctccacctcctgccccgct 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 501 ccaggccaacttcctagaaaactctgactacaccttcttctctccacctcctgccaagct 560

                        
Query: 358 ctgaacccctaca 370
           |||||||||||||
Sbjct: 561 ctgaacccctaca 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 773
Length adjustment: 9
Effective length of query: 361
Effective length of database: 764
Effective search space:   275804
Effective search space used:   275804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)