BAC Information

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BAC

Clone NameMSMg01-331D11
Chromosome7 (Build37)
Map Location 104,936,293 - 104,936,466
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594
Downstream genePak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331D11.T7 (MSMg01no331_d11.b1)MSMg01-331D11.TJ (MSMg01no331_d11.g1)
ACCAG447572AG447573
length740736
length of high quality
(start - end)
247 (72 - 318)178 (69 - 246)
definitionCHROMAT_FILE: MSMg01no331_d11.b1 PHD_FILE: MSMg01no331_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:05 2005CHROMAT_FILE: MSMg01no331_d11.g1 PHD_FILE: MSMg01no331_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGTAGCTCCGCGGAAT
TCCAGCCANGTTCAATTATGGTTTTTTATAAACATCGTTCTGTGTCTGAA
CTGAAGAATCTCTAGTCTGGCCGGGTGGGGGGAGGATGGCAATATAGTCT
CAGCAATTAGGACTGCTTGGTGCTCTTCCAGAAGATCAAACTTAAGTTCC
AAGAATCCACATGTGTGAGGCTCACAACGTCCCCATAACTACAACTCCAT
GATATCTGGCATCCTCTTCTGGCTTCCTCAAGAAATCTACACATATGCAT
GCATGCATGCTCACACTCTCTTTTTTTACACACACCGATGAACAAATAAA
ATTTATAAATCAATACACACCACACTAACTAAATCCAACTCTGAACTTCT
ACTTTGACCAAAATGCCCCCCCACCAATTATGGTGACCTTTCCATTTTAA
TTGACTAAAACCTGTTGAAAACATAACATAATACTTTCCAGATAATGGAC
AATATTCTGTGATTGTCTAGAATCCCCATGACAGAGCTGGACATATTGCT
CCCTGGTTAAGATCACTGACTGCTCTCCCTTATTTTCCGACTTTCTTTCC
TTCTTTCCCCTTCGTTCCCTCCCATTCTTCTGCCCTGTTTTCTCATGCTC
TCTTTCTCTTTTGCTTGAACATCTTTTCTTGTTCCTCACATCATTTTACA
TATCTATCTCCTCCTATTTTACTATTCCCTTTCCCCTCTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCGCAAAAATTCATTTAACTTGGATATCTGGTGTGTGAAATAAG
GCTCTGAGTTTTGGCTCAGAGTAATTTGTCTCGGTTTTTGATGTACTGAA
TTTGAGGTATAGCAGGACAGGCAAGTGATGAATGCCATTTTACAGGTATT
GAGAAAAACAGAATCTGAGCTCAGGTAAAAGGTTTGCGTCAAAATAACCT
CCGGTGGGANAACAAAACAAACTTTTTATTTCACCTGAGTCCAGTATAGC
TTAAAAGTCCTCTTTATTTGTCCCCAGCCCTTACCCTAATTCTCAGACCT
CTACCCCCAGAACAACGGGAGGAGGGATGTTTCGGGGGGGGGGTCGGTTT
CGGGNNNNNNNNNNNNTCCTTCCTTCANTGACCCACNNNNNNNCNAGTTN
NCCTTTTCTCCCCCCTCCCCTCTCNNNNNNNTCTTTTTTATAAAATNNNN
TTNNNTTTCCCCAGCGGNANNTTTNNNNNNNNNNNTNTAAGGGGCGGGTT
ACCCCCCCCCCCCCCCCCCTTTCCTCTTCTTTNTTATTATCTCTCCCCTC
CCCTTTTCTTTTTTTTCCTTTTCCCCTTATCCTTTCCCCTTTTTTTTTTC
CCTCTTCTCTTTCTTTTTCCCCACTTTTTTTCCATGTTTTGTCCCGCCTA
NTTTTTCCTCCCCCTCCTCCTTTTTTTGGGTCGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_d11.g1 MSMg01no331_d11.g1 CHROMAT_FILE:
MSMg01no331_d11.g1 PHD_FILE: MSMg01no331_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:05 2005
         (178 letters)



>mm_chr7_104936091_104936668
          Length = 578

 Score =  329 bits (170), Expect = 7e-95
 Identities = 173/174 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   ttaacttggatatctggtgtgtgaaataaggctctgagttttggctcagagtaatttgtc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttaacttggatatctggtgtgtgaaataaggctctgagttttggctcagagtaatttgtc 262

                                                                       
Query: 63  tcggtttttgatgtactgaatttgaggtatagcaggacaggcaagtgatgaatgccattt 122
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcggttttggatgtactgaatttgaggtatagcaggacaggcaagtgatgaatgccattt 322

                                                                 
Query: 123 tacaggtattgagaaaaacagaatctgagctcaggtaaaaggtttgcgtcaaaa 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tacaggtattgagaaaaacagaatctgagctcaggtaaaaggtttgcgtcaaaa 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)