BAC Information

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BAC

Clone NameMSMg01-331J02
Chromosome7 (Build37)
Map Location 89,982,330 - 89,982,789
singlet/doubletsinglet
Overlap genenone
Upstream geneTm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986
Downstream geneLOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331J02.T7 (MSMg01no331_j02.b1)MSMg01-331J02.TJ (MSMg01no331_j02.g1)
ACCAG447832AG447833
length748752
length of high quality
(start - end)
462 (49 - 510)390 (72 - 461)
definitionCHROMAT_FILE: MSMg01no331_j02.b1 PHD_FILE: MSMg01no331_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:29 2005CHROMAT_FILE: MSMg01no331_j02.g1 PHD_FILE: MSMg01no331_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:29 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCG
GAATTCAATATTCTGTCCGTGAGGGTGTAATTCACATTGCAGAGTACTTG
CCTCACATGTATAAAATCCCCAGCAGTGGATAAACCGGGTGTCACGGTGC
GCAGCTGTAATCCTCTCCCTCAGGAGATGGAGGGAAGAGGACCAGGAGTT
CACAACTAACCTCAGCTATGTAGCAAGTCTGAGGCCAGCTTGGGTCACAG
GAAGCTCTGCCTCAATAAAAAAATTTAAAAGAATTTCATATTATTCTAAG
CCAAGAGCCATAAGTGACTGACATGAGCACACTGCTGCTCAGAGTCCCTT
CTTAGAATATGTCCTAAGGGGATAAAGGGAAGTCAGTCAGCATAATAAGG
GAGCTACAGTGGGATACAGCTCCAGGGATTGGTACATAGCACATTTCCTT
TATCCATTTATCTGTTGATGGACATCTGGGCTAATCCCATGGCCCGCGTA
CTGTGAGTGTTCTGGCAATAAGCATGGGCATGTGAGTATCTCTGTATTAC
GCTGACTTAGAGTCTTTCGGATTCATACCCCCGAATGGCATAGTTGGTTG
GGTGATACTCCTAGTATCACGTAGAGATACCAGTAGTAAGGTTCTCTCTG
ACAGTGTCTCCTCTCATCCACATGTGGTGGACAGCGCTAAGTAAGATAGA
TAGTTTATTTCTTCTATGTATACAGGAGGGCTTTACTAAGCGCTCCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGGTGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACAGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCT
GGAAAGAACCTAGATGCCCCTCAACGGAGGAATGGATACAGAAAATGTGG
TACATCTACAGAATGGAGTAGTACTCAGCTATTAAAAAGAATGGATTTAT
GAAATTCCTAGCCTAATGGATGGAGCTGGAGGGCATCATCCTGGGTGAGG
TAACGCATTCCCAAAGAAACTCATACAATATGTATTCACTGATAAGTGGA
TATTGCCCTCAAACCTGAGAATACCCAAGATATAAGATAAAATTTGCTAA
CACACTTGAAAACTCCAACAAGAATGAAAAACTGAAGTGGTGGACACCTA
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_j02.b1 MSMg01no331_j02.b1 CHROMAT_FILE:
MSMg01no331_j02.b1 PHD_FILE: MSMg01no331_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:29 2005
         (462 letters)



>mm_chr7_89982128_89982989
          Length = 862

 Score =  824 bits (426), Expect = 0.0
 Identities = 452/462 (97%), Gaps = 4/462 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcaatattctgtcc--gtgagggtgtaattcacattgcagagtacttgcctcacat 60
           |||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaatattctg--caggtgagggtgtaattcacattgcagagtacttgcctcacat 260

                                                                       
Query: 61  gtataaaatccccagcagtggataaaccgggtgtcacggtgcgcagctgtaatcctctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtataaaatccccagcagtggataaaccgggtgtcacggtgcgcagctgtaatcctctcc 320

                                                                       
Query: 121 ctcaggagatggagggaagaggaccaggagttcacaactaacctcagctatgtagcaagt 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ctcaggagatggagggaagaggaccaggagttcacaactaaccccagctatgtagcaagt 380

                                                                       
Query: 181 ctgaggccagcttgggtcacaggaagctctgcctcaataaaaaaatttaaaagaatttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaggccagcttgggtcacaggaagctctgcctcaataaaaaaatttaaaagaatttca 440

                                                                       
Query: 241 tattattctaagccaagagccataagtgactgacatgagcacactgctgctcagagtccc 300
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 441 tattattctaagccaagagccataagtgactgacgtgagcacactgctgctccgagtccc 500

                                                                       
Query: 301 ttcttagaatatgtcctaaggggataaagggaagtcagtcagcataataagggagctaca 360
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttagaatctgtcctaaggggatagagggaagtcagtcagcataataagggagctaca 560

                                                                       
Query: 361 gtgggatacagctccagggattggtacatagcacatttcctttatccatttatctgttga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgggatacagctccagggattggtacatagcacatttcctttatccatttatctgttga 620

                                                     
Query: 421 tggacatctgggctaatcccatggcccgcgtactgtgagtgt 462
           ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 tggacatctgggctaatcccatggcccgcctactgtgagtgt 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)