BAC Information

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BAC

Clone NameMSMg01-331J15
Chromosome7 (Build37)
Map Location 79,757,830 - 79,758,161
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665535, Mctp2, LOC100042873
Downstream geneLOC100042880, LOC233391, LOC665570, LOC100042029, EG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331J15.T7 (MSMg01no331_j15.b1)MSMg01-331J15.TJ (MSMg01no331_j15.g1)
ACCAG447856AG447857
length734876
length of high quality
(start - end)
374 (41 - 414)---
definitionCHROMAT_FILE: MSMg01no331_j15.b1 PHD_FILE: MSMg01no331_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:31 2005CHROMAT_FILE: MSMg01no331_j15.g1 PHD_FILE: MSMg01no331_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAAGAAGATCCGCGGAATT
CCAGATCTAGCCTTTCAGCTTCATCTGGTGAACTTCCCAGGAAATTTTCC
ACAGCACTGACCCCCACTCCCAAGCCTGTCTTGGAAGCTGTTTGTTTGGT
TGGTGTTTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTACCTATCTATCTATCTATTCACTTTACATCCTCAT
CTCAGCTCTCCCTCCCTTCTCTTCTCCCCACCCTTTCCTCACAAATCACT
CCCTCCATTATCCCCTCCCATTCTCCTCAGAGAAGAAGAAGCCGCGTTAG
TAGCACCCACCATGGGCCATCAAGTCACAGCAGGACTAAGTACATCCTTT
TCCACTGAGGCCCCACAAGGCAGTCCTGCTTCAAGAAGTGCACCCAATAG
CAGGCAACAGAGTCAGAGATAGCCCCACTCCAGCTGTTAGAGGATCCACA
TAAAGACCAAGCTACCCATCTGCTACTAATTTCTAGGGGGTCTAGGTACA
GCCCTTGCATGCTCCTTGATTGCAGTTTTAGTCTTTGCGATTCTCCATGT
CATCACCCTATTTGACTTTGTATGTCTTCTTGTGTTGTCTTTGATTCCTC
TGATTCCTCCAATCCCATTCCCCTTAACTCTTTCAGATTTTCTGCACCTT
TGTTTGTTCCTTTTTTTTTTTTCCTTCCCCTTTG
ACAGTGGGAAGGCGGGNGGCGCCGGTTTCCCAACCGANNNGAACGAGAGA
AGTAACGNGACCAGACNANCNCNGCCGGCCGGGCNNCCGGGCCNCCGNCC
GGCCTTTTTCCCCCAAAAAAAAAACACCNGCCNNCCAACCCCACAACCGA
ACAAACGAACAAACAAACAACCGGAGAGGAGGGCCGCAGCACGGGAGGAG
AGAGCCCNCGGAAGCCACAAGAAAAACAAAAAAAGAAAATTTTTTTAAAA
AAAAAAAAAAAAAAGAAAAAAGGAGAAAGAAAACAAACAGAAAAAGAAAA
AGACGGAGGAGGATTTGCGTAATTTTACACAAAAAAAGGGGGGAGAGGAA
AAAAGAAGAAAAAAAATAAAAGAAACCCCCCCCCCAGAAAAAAAGAGAAG
GAAAGAAAAAAAAGAAAAAGGGAAAGAAAGAGGGGAAACACACAACAAAA
AAAAAAAAAAAAAAGAGAAGAAAAAGAGAGGAAAAAAGGAGAGAAGAAGA
AAAGCAAAAGGGAGAAAAGAAGAGAGGGAAAAAGAAAAAAAAAAAAAAAA
AAGGAGGAAGAAAAGAAAAGAGAAAGAAAAAAGAGGAGAAAAAAAGAGAA
GGAAAGGAGAAAAAGAGAGAAGAANAGGAAAAAAAAAGAGAAAAAANGAA
CGAAAAGAGAACAACGAAAAAAGAGAAAGNAAAAAACAAAAAAAAAAGAA
AAGGGAAGAAGAAAACAAAGAGAGAACAAGACGAGACAAAAAGAACAAGA
AGGAATATTTTTTATTTAATTTTGATAAGGAGAGGGAACAGAAAAGAAGA
GAAAAAAATAGACAGAGAAAAAATAGAGAAAAAGAAGTAAAAAGAGGCGA
GGAATGAATGGAAAGAAAGAAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_j15.b1 MSMg01no331_j15.b1 CHROMAT_FILE:
MSMg01no331_j15.b1 PHD_FILE: MSMg01no331_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:31 2005
         (374 letters)



>mm_chr7_79757622_79758395
          Length = 774

 Score =  507 bits (262), Expect = e-148
 Identities = 323/364 (88%), Gaps = 32/364 (8%)
 Strand = Plus / Plus

                                                                       
Query: 9   ttccagatctagcctttcagcttcatctggtgaacttcccaggaaattttccacagcact 68
           ||||||||||||  ||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 209 ttccagatctagtgtttcagcttcatctggtgagcttcccaggacattttccacagcact 268

                                                                       
Query: 69  gacccccactcccaagcctgtcttggaagctgtttgtttggttggtgttttatctatcta 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gacccccactcccaagcctgtcttggaagctgtttgtttggttggtgttttatctatcta 328

                                                                       
Query: 129 tctatctatctatctatctatctatctatctatctatctatctatctacctatctatcta 188
           |||||||||||||||||||||||||||||||||||                         
Sbjct: 329 tctatctatctatctatctatctatctatctatct------------------------- 363

                                                                       
Query: 189 tctattcactttacatcctcatctcagctctccctcccttctcttctccccaccctttcc 248
                  ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 364 -------actttacatcctcatctcacctctccctcccttctcttctccccaccctttcc 416

                                                                       
Query: 249 tcacaaatcactccctccattatcccctcccattctcctcagagaagaagaagccgcgtt 308
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct: 417 tcacaaatcactccctccattatcccctcccattctcctcagagaggaggaagccccgtt 476

                                                                       
Query: 309 agtagcacccaccatgggccatcaagtcacagcaggactaagtacatccttttccactga 368
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 477 agtagcacccaccatgggccatcaagtcacagcaggactaagcacatccttttccactga 536

               
Query: 369 ggcc 372
           ||||
Sbjct: 537 ggcc 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)