Query= MSMg01no331_m22.b1 MSMg01no331_m22.b1 CHROMAT_FILE:
MSMg01no331_m22.b1 PHD_FILE: MSMg01no331_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:46 2005
(695 letters)
>mm_chr7_84227461_84228554
Length = 1094
Score = 843 bits (436), Expect = 0.0
Identities = 581/692 (83%), Gaps = 101/692 (14%)
Strand = Plus / Plus
Query: 4 ggaattctccccactataccagtatgaggcagaagttaggtgagaccgaagatgccatct 63
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccc-actatacaagtatgaggcagaagttaggtgagaccgaagatgccatct 262
Query: 64 cattaaataaaatgtgcaaaggcattggctgagagagcatgatctctcaggggttattta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cattaaataaaatgtgcaaaggcattggctgagagagcatgatctctcaggggttattta 322
Query: 124 tgtatcacgatggcaatggtgtgatcctttagaggggaacatgataaaaagtgacataga 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 tgtatcacgatggcaatggtgtgatcctttagaggggaacatgataaaaggtgacataga 382
Query: 184 ccataccataaaacagaagcactccacaatctaaggattagagcttaattctttcatggg 243
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 383 ccataccataaaacagaagcactccacaatctaaggattaaagcttaattctttcatggg 442
Query: 244 gagagtggggaaaattctgcttataaaattctgacatagaccataccataaaacagaagc 303
|||||||||||||||||||||| || ||
Sbjct: 443 gagagtggggaaaattctgctt-ta----tc----------------------------- 468
Query: 304 actccacaatctaaggattagagcttaattctttcatggggagagtggggaaaattctgc 363
||||| ||||| |||
Sbjct: 469 -----acaat--------tagag--------------------agt-------------- 481
Query: 364 tttatcacaattacacagctacttttctccttgttctatgccatggcagtcacatcctaa 423
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 -------------------tacttttctccttgttctatgccatggcagtcacatcctaa 522
Query: 424 cacatccttcaagaccgtgctggaagtgctggcacttcgattttcctctcaccatgaact 483
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 523 cacatccttcaagaccgtgctgaaagtgctggcacttcgattttcctctcaccatgaact 582
Query: 484 ggcattatgttaactctacattttacaaatcaactccctcactaggcaagtgagagtaac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggcattatgttaactctacattttacaaatcaactccctcactaggcaagtgagagtaac 642
Query: 544 cttggatttttggggtacagattttaagtcaaagaataagggaatgagggtctccaattt 603
||||||||| || ||||||||||||||||||||| |||||||||| |||||||||| |||
Sbjct: 643 cttggatttctgaggtacagattttaagtcaaaggataagggaattagggtctccagttt 702
Query: 604 tatgaagcaatagaggaaacaacgtaggcaatttaagagctaaaatcaagtgtaggttta 663
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 703 tatgaagcaatagaggaaacaacttaggcaatttaagagctaaaatcaagtgtaggttta 762
Query: 664 tataaaatgccctgaatggtattttcagtaat 695
||||||||||||||||||||||||||||||||
Sbjct: 763 tataaaatgccctgaatggtattttcagtaat 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1094
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1084
Effective search space: 742540
Effective search space used: 742540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_m22.g1 MSMg01no331_m22.g1 CHROMAT_FILE:
MSMg01no331_m22.g1 PHD_FILE: MSMg01no331_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:46 2005
(661 letters)
>mm_chr7_84386313_84387373
Length = 1061
Score = 1170 bits (605), Expect = 0.0
Identities = 647/661 (97%)
Strand = Plus / Minus
Query: 1 caaggtaaaagggacataaataggagatgttattatttccttcaagatacatgattatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 861 caaggtaaaagggacataaataggagatgttattatttccttcaagatacatgatcatgg 802
Query: 61 tttcttgacccagtgaacctttatggagttttcaaaatggaattaaacaccatgatctca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 801 tttcttgacccagtgaacctttatggagttttcaaaatggaattaaacaccatgatgtga 742
Query: 121 taacctaacattttgtatgtaactcattaatcaaagctgattaatgaatgagttcttcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taacctaacattttgtatgtaactcattaatcaaagctgattaatgaatgagttcttcta 682
Query: 181 ggctaaacactcaggcatttcatgatctgtgggggtccaggctagcatggacaacatcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggctaaacactcaggcatttcatgatctgtgggggtccaggctagcatggacaacatcat 622
Query: 241 gaacaatattgccaatatttgcaaacattcacaacatttctatacttgggatgccaattc 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaacaatattgccaatattggcaaacattcacaacatttctatacttgggatgccaattc 562
Query: 301 ctattactacctaagaatctttcaataatatacatgttaataaaatgacattatggttat 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctattactacctaagattctttcaataatatacatgttaataaaatgacattatggttat 502
Query: 361 agtcatatttcctcaaattcaagatgaaaaaatgaaggcacattttctagggttctggac 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 agtcatatttcctcaaattcaagatgaaaaaacgaaggcacattttctagggttctggac 442
Query: 421 agccatttgcaataaactcctttagtgccctcacagtgtagacctatgtcactttaagcc 480
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 441 agccatttgcaatcaactcctttagtgccctcacagtgttgacctatgtcactttcagcc 382
Query: 481 cataatgagcttatgagcatctgattggctagccacattgtccataggtggccaaaggga 540
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataatgagcttatgggcacctgattggctagccacattgtccataggtggccaaaggga 322
Query: 541 gccctctagtgaaagtgtgtgaggctttttctgaaagcattccacaggtccccttgtagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccctctagtgaaagtgtgtgaggctttttctgaaagcattccacaggtccccttgtagg 262
Query: 601 acatctaggtaagagacaacttaattcacacagaacatggtttatttctcattatttttg 660
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 261 acatctaggtaagagacaacttaattcacacaaaacatggtttatttatcattgtttttg 202
Query: 661 c 661
|
Sbjct: 201 c 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
