BAC Information

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BAC

Clone NameMSMg01-332C03
Chromosome7 (Build37)
Map Location 82,994,043 - 82,994,718
singlet/doubletsinglet
Overlap geneKlhl25
Upstream gene0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171, Akap13
Downstream geneLOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332C03.T7 (MSMg01no332_c03.b1)MSMg01-332C03.TJ (MSMg01no332_c03.g1)
ACCAG448246AG448247
length1,2431,265
length of high quality
(start - end)
562 (132 - 693)667 (139 - 805)
definitionCHROMAT_FILE: MSMg01no332_c03.b1 PHD_FILE: MSMg01no332_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:16 2005CHROMAT_FILE: MSMg01no332_c03.g1 PHD_FILE: MSMg01no332_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGACCATCCAATNNNNNCCATTGCGCGCAAGACTCACAAGGGAGAGG
ATCCGCGGAATTCAGGCCCATACCTAAACCTCTCCCCTGCAACCTACAGN
AAACCAGNAGCCAACATCAAACCTTATAAAGAGAAGCTGGAAGCAATCCC
ACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTCTTC
AACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGAT
CAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAG
ATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTC
CTAAACCTGATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTC
AAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAG
AAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATAT
CTCGGCGTGACTCTAACTAAGGAAGTAAAAGATCTGTATGATAAAAACTT
CAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATC
TCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTG
CCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCA
ATTCTTCAACGAATTAAAAGGAGCAATTTGCAAATTCATCTGGAATAACA
AAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAAACTCTGGT
GGAAACACCATGCCTGACCTAAAGCTTTACTACAAGGCAAATGTGATAAA
AACAGCATGGAACTGGGGTAGAGACAGACCAATAGACCCAGGGAATAGAA
TTGAAGACCCCGAAAAGGAACCCCCCCCCCAGGGCCACTGGATCTTCCAC
AGGGAGCTAAAACCTCCACCGGAAGAAAACAGATTTTCACAATGGGGCTG
GCACACGGGTGGTACCTGTGAAAAAAGGAAATCATCCAACCTACCTCCTG
GCCTAAGGCCAACCAAGGGATCAGGGACTCCCTAAAACCGAGACCGGAAC
TTAAAAGAAAAAGGGGAAAGCTTGAAAAAGGGTCGGGGAAAACCCGAAAA
AAAAAAGGTGGCCGAAACAAAATGCATGGACCAAGAATCCAGTTCGGGGA
AAAACCCCAAGGAAAAACCCCCAGGGAAGATCTCTCTCTAAAA
NCCGGGTCTTTTNTNNAAGCATGGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTATAAGGGCTCTGCAAA
TCCCCACTGGACTAGTCTCCTTCCTATCTGTATTAGAACCTTTTTCCTAC
TCGGGAATTGTGCCTACTGGGGCACCAGACACTTGGGTGTAAGTGCCTCA
AGGACCTCAAAGTGGATTCTCACAGTCTTACTTTTTTTTTTTTTCTCTCT
CCCGGTTTTAGTCTTGTTATAAACGTTAGGCCAGCCTTGAGCATGAAATC
TCTGGTCCCAGTCTCCTGAGAGCTGGGTTTATAAGCAAGTACCAATCTGG
GAGACTTTCTAGAGACTCGAGCACAGGAAGTTGGGGGGAGGGGCGGACTC
TCGGGGGCTTTGTATTTCATCTGTACTTTGGGGAGACCAGAGGCCAAGTT
GCTTTGGCCAAGGTTCATTGGGCACTAGTTCTCCCTCCATGCTCAGGGCA
GGACAAGGTATGCCAGATGTCTGGGCTCTTCACCCCTGGAGTAAGACGGG
GAGGGAGGGGCACTTGGCACCTGACCCTCTAGTTTGCTGAGCCTCTTTCA
TAAGCGGTACAGTTATGCTGGGAGGACTTTTTATGGGTGTTGCTGAAACC
TTGTGTCAGGGGACAGAGGAGGGAGGACCCACGGTGCTCTTATCCTACAG
TAGATTTGGTCCCTCTAAGACAGGGTTGTGGAGATCACAGGCTTTGTCTG
TGGAGATGGGCAAAGTCACTTTTGTCCCAGCCCTGTAATTATTGATATTT
CAGCTGAGTCCTTTATCTGCAAGCCAGTCCAGGGAGATTGTTCAAAAAAA
TTGTGGAGGATGGACAGACGAAATCTTTTTCATGGGCATCGAACTGCAAC
TGGGTTCCTTGCGCCATGCAACAGTGCAAGATCCGTGTGCAAGTTGTGTG
TTCCCCGGGGGTTCAGTCCCTGTTGATGGCATCTAAACCCTGGGCCCCCC
GTGGAGGGAGAAAAATAGTTGTAAACAATTAAAATGGCCCCCGGGGGGGT
CGTGCAAAAAATACTTCTTTCCCCTTAAAAAGAGAGAGAGGGCCTGCACC
TATGAATTTGTTTTCTCAAAACCTCTTTTTAAATAAATCTCTTGTCAAAA
AATATCATTCCTCCTTTTTCAAAAGAGAAGATGTGTTCTCTCATTTGCCA
CTATTCCCCCTTTTCTATCTCCTCCTTATCACTCTATTCTTCGTAATAAC
ATATTGTCTTCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_c03.g1 MSMg01no332_c03.g1 CHROMAT_FILE:
MSMg01no332_c03.g1 PHD_FILE: MSMg01no332_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:16 2005
         (667 letters)



>mm_chr7_82993852_82994918
          Length = 1067

 Score = 1212 bits (627), Expect = 0.0
 Identities = 660/677 (97%), Gaps = 12/677 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctttttcctactcgggaattgtgcctactggggcaccagacacttgggtgtaagtgcctc 61
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 192 ctttttcctactcgggaattgtgcctactggggcaccagacacttgggtgcaagtgcctc 251

                                                                       
Query: 62  aaggacctcaaagtggattctcacagtcttactttttttt---tttttctctctcccggt 118
           ||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||
Sbjct: 252 aaggacctcaaagtggattctcacagtcttacttttttttctttttttc-ctctcccggt 310

                                                                       
Query: 119 tttagtcttgttataaacgttaggccagccttgagcatgaaatctctggtcccagtctcc 178
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttagtcttgttataaacgtcaggccagccttgagcatgaaatctctggtcccagtctcc 370

                                                                       
Query: 179 tgagagctgggtttataagcaagt--------accaatctgggagactttctagagactc 230
           ||||||||||||||||||||||||        ||||||||||||||||||||||||||||
Sbjct: 371 tgagagctgggtttataagcaagtgccaccttaccaatctgggagactttctagagactc 430

                                                                       
Query: 231 gagcacaggaagttggggggaggggcggactctcgggggctttgtatttcatctgtactt 290
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 431 gagcacaggaagttggggggaggggcggactctcgggggctttgtagttcatctgtactt 490

                                                                       
Query: 291 tggggagaccagaggccaagttgctttggccaaggttcattgggcactagttctccctcc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tggggagaccagaggccaagttgctttggccaaggttcattgggcactagttctccctcc 550

                                                                       
Query: 351 atgctcagggcaggacaaggtatgccagatgtctgggctcttcacccctggagtaagacg 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atgctcagggcaggacaaggtatgccagatgtctgggctcttcacccctggagtaagacg 610

                                                                       
Query: 411 gggagggaggggcacttggcacctgaccctctagtttgctgagcctctttcataagcggt 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 611 gggagggaggggcacttggcacctgaccctctagtttgctgagcctctttcataagcggc 670

                                                                       
Query: 471 acagttatgctgggaggactttttatgggtgttgctgaaaccttgtgtcaggggacagag 530
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 671 acagttatgctgggaggactttttatgggtgttgctgaaagcttgtgtcaggggacagag 730

                                                                       
Query: 531 gagggaggacccacggtgctcttatcctacagtagatttggtccctctaagacagggttg 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gagggaggacccacggtgctcttatcctacagtagatttggtccctctaagacagggttg 790

                                                                       
Query: 591 tggagatcacaggctttgtctgtggagatgggcaaagtcacttttgtcccagccctgtaa 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tggagatcacaggctttgtctgtggagatgggcaaagtcacttttgtcccagccctgtaa 850

                            
Query: 651 ttattgatatttcagct 667
           |||||||||||||||||
Sbjct: 851 ttattgatatttcagct 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)