BAC Information

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BAC

Clone NameMSMg01-332E02
Chromosome7 (Build37)
Map Location 73,040,447 - 73,041,080
singlet/doubletsinglet
Overlap genePcsk6
Upstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241
Downstream geneSnrpa1, H47, Chsy1, Lrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332E02.T7 (MSMg01no332_e02.b1)MSMg01-332E02.TJ (MSMg01no332_e02.g1)
ACCAG448335AG448336
length1,2781,251
length of high quality
(start - end)
634 (139 - 772)274 (136 - 409)
definitionCHROMAT_FILE: MSMg01no332_e02.b1 PHD_FILE: MSMg01no332_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:30 2005CHROMAT_FILE: MSMg01no332_e02.g1 PHD_FILE: MSMg01no332_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGCCGGCTCTCTNGNNANTCATTCGCGCTATAGACTCCTATAGGGAGA
GGATCCGCGGAATTCCTTGTTNNCTTTGCGTCCCTCACGGCCCCGNNNTT
TNANNAGAAGANAAGTAGACGTCCCTTTAACTATCCTGCCTCTGAGAATG
CAGGTCCCTGTTTGTATCTTAGGACACATTTTGGTAGACGATGGAGCTTG
GTGATGCCCTCTGAACTCTTGGTGGCTAGGATGACTTCTTGTGTCTCTCT
CAATCTTGTTCTATTCATTCTTATTGGTACCCCTTCTAAAGCAGGCTCTG
GCTGCCCCAAGTCCTGCTAGGTCTCCCATATTTAGGACTGTGTTCTGCTC
TAATGGCTGCTCACGTCCATGTTGAAGCAGTCCATGAGGGATGGATGGGT
GTCCATGGATTTCTGTGGTAGCTGTATAAGATGAAAGCATCAGTCAGAAG
AATGGAGGGAAACAGGGACGGAGCTACCCAGCAGTGCTGTCAGTAAGCAC
AAAGGAGATACACAGAAGGCTGGGTGGCTCTTCCTTGGGCCCTGGTGTGC
AAGACACTACTGTGTGCCTCGTGTCAGCGAGTCCTGGGTGGGGAGGGCAC
AGTGGGCAGAGTTCATTCTCCTGTCTTCCTTTGAAGCAATTAGTTTACTT
GATCAGTGATCTGGAGGCTTTACTTTGAATATGAAAGTGCTGCCAAAGTT
ATTTATCAGCAAATATTCCAGAGAGCACAGGNGCATGAAGTGACTGGAAA
GTAAGCCAATGTCTCTCTGAGAGAGGAGAAACTGAGGCTGGTANAAGATC
ACAGAACCCCGGTTACAGGGGATTCAATGCCCTTCTTCTGACCTCCCAGG
ATATCAGTGTAAATGAGGTTCATAGGGCAAACACCCATGTGTGAAATATA
AAAATAAATAGATCTACCTTAAAAAAAATTCCCCTCTATGGGTCCAGAAA
AGACAACTCCCCATTTAGAGAAGAGCCCTTTTCCAGAAGACCTGGGGTCC
ATTCCCAGCAACCACCTCCCAGCTCCAAATGGCCTGTAATTTCCTCCCCA
GGGAACCCAAAGGCTCCTCAAGGCCCCCGGACACCGGTGTGGGGCCCCCA
TAATAGAAACCCGGGGGGGGAAAAACCCCTACAAAAAATTTTTTTTAAAG
GAGGTTCCCCGGGGTTTGGACCCCCAGGGGGCTTTTTAATAAAAAATATT
TAGGGTCGACCACAACATGGGCAGGGGGGGCCCCTCCAAGAGACACACCA
AAAAAACGGTCTGTGTGTGTTGGGACCC
CCGCCCCTTTTTTAAACGCATGGAGNCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTAGAAGCCCCCAGNTTCAA
GCTGCCACGCTGGNCTTGGCTTTTAAAACCCCGCGCTGTTAACTAGAGTC
CTATCTCCAGCCCATGGTCCTTTTCTTAATGAAAGCTTTGCCATCAGGGT
GGTGGTAGTGCACGCCTTTGATCCTAGCACTCAGAAGGCAAAGGGAGGCA
GATCTCGGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAG
CCAGGGCTCACAGAGAAACCCCACTCATACAAACAAATATGATCTTAATT
TCACAGAATTATATTGTAGAAACCAACTACAAAAACCAAAACCAGCATAA
TGGATGAGGTATATGTACTCAGTGAAAAGTAACTTTATTTCATAAAAAGA
TTTTTACTGTGACAGGGTCTCACTATGTAGCCCTGGCTGGAATTTGCTGT
CAACAAGGCTGTCCTTGAACTCAAGAGATCAGCCTGCCTCAGACTCCAGA
GTGTTAGGATTAAAGGCAGATACCACTACACATGGCCTTTATAAATCTTT
TTAATTATGATGCTATTGATGACTACTCTAAAATCTGATTTGTTGACATA
GCACAATGCTTCAAATTCAAAGTTTAATGTCAGTTACGAATATTAAAGAT
TTCTGAAGAGTAGCAAGTAAGGTCAGGCCAATGCCCAAGTTAATCTCCAA
CCTCTTAGGAAAAGGGCTCTATTCATTTCTCCCTTTAAGACACATGGGCA
GGCTGGAGTGGTGGTTCATCAACTTAAAGCCCTGGCTGATCTTCCCGAGG
AACCAGATTCTATTCCTAACGCTGGAGCAGCTCCGGACTATCTGTAAACC
TAGTTCCAGAGAAGCCAAGGCCCTCCTCTGGCCTCCAAAGGCACAAGAGG
GTGTGTGGTACCCTGCAGCAAAAACTAATATTCTTTTAACATAACCAAAA
CACCACCCAAAACCCATTATCTTCGGGTACTTTAAATTCTTATTCAGGTA
AAAAGTATTCTAATTATCCCCCTCCCCCAATTCGTTGGTGTCCACTACAA
GGGTTTCACGCTTCTCACCAAGGGAACACCCCCGTTTTCCGGATCTCTTG
GTCAAAAAACCTACAAATCTAACTGTTCTTAGGGGGCCCCTCAATCCCCA
TACCCCGGAATTTTATCCCTGCGAAGGGTAACATCTTTTCCTCCATATTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_e02.b1 MSMg01no332_e02.b1 CHROMAT_FILE:
MSMg01no332_e02.b1 PHD_FILE: MSMg01no332_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:30 2005
         (634 letters)



>mm_chr7_73040247_73041280
          Length = 1034

 Score = 1181 bits (611), Expect = 0.0
 Identities = 628/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctgagaatgcaggtccctgtttgtatcttaggacacattttggtagacgatggagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctctgagaatgcaggtccctgtttgtatcttaggacacattttggtagacgatggagct 260

                                                                       
Query: 61  tggtgatgccctctgaactcttggtggctaggatgacttcttgtgtctctctcaatcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtgatgccctctgaactcttggtggctaggatgacttcttgtgtctctctcaatcttg 320

                                                                       
Query: 121 ttctattcattcttattggtaccccttctaaagcaggctctggctgccccaagtcctgct 180
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 321 ttctattcattcttattggtaccccttctaaagcagactctggctgcctcaagtcctgct 380

                                                                       
Query: 181 aggtctcccatatttaggactgtgttctgctctaatggctgctcacgtccatgttgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtctcccatatttaggactgtgttctgctctaatggctgctcacgtccatgttgaagc 440

                                                                       
Query: 241 agtccatgagggatggatgggtgtccatggatttctgtggtagctgtataagatgaaagc 300
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 441 agtccatgagggatggatgggtgtccatggagacctgtggtagctgtataagatgaaagc 500

                                                                       
Query: 301 atcagtcagaagaatggagggaaacagggacggagctacccagcagtgctgtcagtaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcagtcagaagaatggagggaaacagggacggagctacccagcagtgctgtcagtaagc 560

                                                                       
Query: 361 acaaaggagatacacagaaggctgggtggctcttccttgggccctggtgtgcaagacact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaaggagatacacagaaggctgggtggctcttccttgggccctggtgtgcaagacact 620

                                                                       
Query: 421 actgtgtgcctcgtgtcagcgagtcctgggtggggagggcacagtgggcagagttcattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgtgtgcctcgtgtcagcgagtcctgggtggggagggcacagtgggcagagttcattc 680

                                                                       
Query: 481 tcctgtcttcctttgaagcaattagtttacttgatcagtgatctggaggctttactttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctgtcttcctttgaagcaattagtttacttgatcagtgatctggaggctttactttga 740

                                                                       
Query: 541 atatgaaagtgctgccaaagttatttatcagcaaatattccagagagcacaggngcatga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 741 atatgaaagtgctgccaaagttatttatcagcaaatattccagagagcacaggggcatga 800

                                             
Query: 601 agtgactggaaagtaagccaatgtctctctgaga 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 agtgactggaaagtaagccaatgtctctctgaga 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)