BAC Information

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BAC

Clone NameMSMg01-332E12
Chromosome7 (Build37)
Map Location 89,819,937 - 89,820,551
singlet/doubletsinglet
Overlap geneEftud1
Upstream geneHomer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik
Downstream geneLOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332E12.T7 (MSMg01no332_e12.b1)MSMg01-332E12.TJ (MSMg01no332_e12.g1)
ACCAG448355AG448356
length1,3201,315
length of high quality
(start - end)
---615 (131 - 745)
definitionCHROMAT_FILE: MSMg01no332_e12.b1 PHD_FILE: MSMg01no332_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:34 2005CHROMAT_FILE: MSMg01no332_e12.g1 PHD_FILE: MSMg01no332_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTCCCCNNNNNCNCCCGGCCTTTGGGNCCATTGGGGCTAAGACTCCTAT
GGGAGAGGATCCGCGGAATTCTCAGAGTACTAAGGAACTTCTACTACTCG
CCAAANNNNNNNNNNNAGGGAAANNNATCTTAAAAAATATTGNNNNAGAT
TTGNNATTNTGGNTTTNTNTTNTTNTNNTTTTNTTTTGTTTGTGTATGGT
ATGTANGTGTGGTTGTANATGTATGTGNAGGTANAAANANNNANTTGGAN
ATATGTATGGTGAGGNNAAAGGAAGAATTTAGAAGTNGTGANTTGTNATT
ATNTANNTNATTNNNTTATGANAGGGTNTNTNANTGTGTTTGGAGNTTGG
NATTAGGNTGGNTGAANGGNAAGNNNNAGAGATNTTTNTGTNNANTTGAG
ATGGTGGTGGTTAATAATTTTGAAAGTGTNTAGTGTTTTGGNNTAGTTTT
TGTNNAGGAAGGAGATGATNNGGAGTGGTNAGGNAGATNGTTTGGAATAA
GGTATGAGTGANGTGGTAAANGNTGGNATTTNATAGNTNNNATGGNAAGG
TTAAGGNTATGTAGNNTGGGTNNATAAAAGNATGGTGGTTTNNGTTNTTN
ATTNTTTNTNTTGGTGGNNNTATTNTGTNTGGTGTGGNTNTGAAANTGGN
NAGNTGAAGNNAGTTTGGNTGGGAGTTNNNTTAANNATATGGAAAAANTT
TNNTATAATNATANTTTGTGNGAAAGAAATGTGGGAAATGAAGNNATGGN
TNNNNTGAGNATGTATTANTGAGNNTTANAGGGTNNANGTTGTTTNTAAG
NTAGTGTNTTGGGAAGAAATNATTNNTGGTTTNNTTGGGAATNTNNTTGA
GTTAAGAAATGGNTATGAGAGGNTATTGGNANAGTTTTGGANTGGATAAA
GTGGAGAAAGGTGNATAAAGGATATTAATTTTTTGTGGAGNGAGGNAGAT
ATAAGGTGTAAGAGANTGGAGNTNAAGTTTTATTTTGAAGAAAAATTGAA
TGAATTTTGATAAAAAAANNAATTTTTTGTTTTAATTAGGGGGAAATGGG
TTTAAAAAAANNTAAAAAATTTTTTTGGTGGAAAAAAATGGGAAGTATTA
AGTTTAGGGAAAAAATTGGGGGGGGTTTTTTTAAAAAAAAATTTGGTAAA
TTTTTAATTGGGGTGGGGGAGGGTTATGGTTAAAAATTGGTTTTTTGTAA
AAAGGAGATTGGTTTGGTTNAATTGGAAGAAAAGTTGTATTTGAATTGGG
TTAAAAATATTGTGTGGGGAATGTATTAGATTNNAAAAAAAAAAATTAAT
TAGAGTATTTTGTTTGTTTA
CGACTCCTTTTNNNAACGAGGCGTAGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTAAAAGCCCAAGGATGTGTG
TTTGTGTGCATATTGAGCCTTTAATACAAAAGAATTGCAATGTCTTGGAG
AAAACTATACTGTGCTATCACCAGCCTTCCAGGCCTCTCTCAAATTCAAC
ATTCTCCAGCTTTTGACAAGTCTTCTTCTAAGACAATACCATAGACACAT
TTGTCAAAGTGCAGCCATCATTTCTTATGATCTCTTTAAGACTCTGATGA
TAAACTTCATTCCATTCGGGAACACTGACAGATGTGAAATATAAAACCCA
CTGTGTGTCAGTAGCACAGAGCAATCAACAGTGGCTGCACTTGCTACACG
TTCTTTAAGATGTTTGAGGATCATAACTCTTACCTGTGGACAGACCCCCT
CCACAGCATCCACCACAATGATGCATCCATCACAAATGCGAACCGCTGTT
GATACTTCTGAGGAGAAGTCCACGTGTCCAGGAGAGTCTATCAGATTAAT
CAGGTACTCCTCATGACCTGAAATAAAATTAGAAGACACATTTATAGCTG
GGTAGACAATCAATCATCGTACCCAGGGACTTAAGAAGAAAGATACTTCT
AAGACAAGACCGAACAGCTATCATTCCAACGTTACCATAGAATCTGACAA
CATCTAGTTCATTATTATATTAAGAGCTTAGAGTATGCCTGGTACCGCAG
ATAAGACTTTTAATGCATCAAATACATGCTGGATTATGAAATTTCCCCTA
TGAGATAAATATCTTCATTCTCCTTTTATATATTAGTTAGTTGAAATGGA
AAGCAATCAATGCTTTAGGCGGTGGTTATCAACCTGTGGGTCACGACTCC
TTTGGGGGCCAAACAACACTTGCCCAGGAATAAATACCAAACACCCTGGG
TATCAGATATGTATATCATGATCCATAACAGTAGCCTAATTGCCATTAAA
GAAAATAACCTTATGTTAAAAACTCCACCAGCTGGAAAAGTTCCCTAAAG
AAGTCCCGCCATTATAGGGTTAAAACCCCTGGGTTTGGAACCTCAAAAAA
AAAACTGGTCCAAGGGGCCCCCTAAGCCCCTTTTAAAATTAATTTCTCAA
ATCCAATTTCCAACCCCTGGGACTCTCCGGGAACCCGGTGTACTCTTATA
TCCCCTCTGGTAATCCAATCTTACCTTGCCCAATAGTTTAGTGAGCTTTT
TCCGCGGCAAGGCTCTCCCCCCACCTCCTTTAATTCTCAACAATGAACAC
TCCTCGCTGGATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_e12.g1 MSMg01no332_e12.g1 CHROMAT_FILE:
MSMg01no332_e12.g1 PHD_FILE: MSMg01no332_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:34 2005
         (615 letters)



>mm_chr7_89819737_89820751
          Length = 1015

 Score = 1174 bits (607), Expect = 0.0
 Identities = 613/615 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaattgcaatgtcttggagaaaactatactgtgctatcaccagccttccaggcctctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 agaattgcaatgtcttggagaaaactatactgtgctatcaccagccttccaggcctctct 756

                                                                       
Query: 61  caaattcaacattctccagcttttgacaagtcttcttctaagacaataccatagacacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 caaattcaacattctccagcttttgacaagtcttcttctaagacaataccatagacacat 696

                                                                       
Query: 121 ttgtcaaagtgcagccatcatttcttatgatctctttaagactctgatgataaacttcat 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttgtcaaagtgcagtcatcatttcttatgatctctttaagactctgatgataaacttcat 636

                                                                       
Query: 181 tccattcgggaacactgacagatgtgaaatataaaacccactgtgtgtcagtagcacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tccattcgggaacactgacagatgtgaaatataaaacccactgtgtgtcagtagcacaga 576

                                                                       
Query: 241 gcaatcaacagtggctgcacttgctacacgttctttaagatgtttgaggatcataactct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gcaatcaacagtggctgcacttgctacacgttctttaagatgtttgaggatcataactct 516

                                                                       
Query: 301 tacctgtggacagaccccctccacagcatccaccacaatgatgcatccatcacaaatgcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tacctgtggacagaccccctccacagcatccaccacaatgatgcatccatcacaaatgcg 456

                                                                       
Query: 361 aaccgctgttgatacttctgaggagaagtccacgtgtccaggagagtctatcagattaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaccgctgttgatacttctgaggagaagtccacgtgtccaggagagtctatcagattaat 396

                                                                       
Query: 421 caggtactcctcatgacctgaaataaaattagaagacacatttatagctgggtagacaat 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 395 caggtactcctcatgacctgaaataaaattagaagacacatttatagctgggcagacaat 336

                                                                       
Query: 481 caatcatcgtacccagggacttaagaagaaagatacttctaagacaagaccgaacagcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 caatcatcgtacccagggacttaagaagaaagatacttctaagacaagaccgaacagcta 276

                                                                       
Query: 541 tcattccaacgttaccatagaatctgacaacatctagttcattattatattaagagctta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcattccaacgttaccatagaatctgacaacatctagttcattattatattaagagctta 216

                          
Query: 601 gagtatgcctggtac 615
           |||||||||||||||
Sbjct: 215 gagtatgcctggtac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)